Re: [Bkchem-user] Error message

[Beda Kosata]

This is strange, I will try to have a look at it.

Thanks for reporting it.

        Best regards

                Beda

FyD wrote:
> Quoting Beda Kosata <address@hidden>:
> 
>> this is a known problem. It is fixed in the 0.12.0 preview releases
>> which are in many ways better than 0.11.6, so there should be no reason
>> not to upgrade.
> 
> It works fine after a "local" install if I run:
> address@hidden ~]$ python bkchem-0.12.0_pre7/bkchem/bkchem.py
> 
> However, I get the following error message if do a "general" install and
> I simply run:
> address@hidden ~]$ bkchem
> Traceback (most recent call last):
>    File "/usr/lib/python2.5/site-packages/bkchem/bkchem.py", line 165,
> in <module>
>      myapp.initialize()
>    File "/usr/lib/python2.5/site-packages/bkchem/main.py", line 100,
> in initialize
>      self.init_singletons()
>    File "/usr/lib/python2.5/site-packages/bkchem/main.py", line 437,
> in init_singletons
>      Store.gm.add_template_from_CDML( "groups.cdml")
>    File "/usr/lib/python2.5/site-packages/bkchem/temp_manager.py",
> line 66, in add_template_from_CDML
>      m = molecule( Store.app.paper, package=tmp)
>    File "/usr/lib/python2.5/site-packages/bkchem/molecule.py", line
> 89, in __init__
>      self.read_package( package)
>    File "/usr/lib/python2.5/site-packages/bkchem/molecule.py", line
> 340, in read_package
>      bnd = bond( standard=std, package=b, molecule=self)
>    File "/usr/lib/python2.5/site-packages/bkchem/bond.py", line 95, in
> __init__
>      self.read_package( package)
>    File "/usr/lib/python2.5/site-packages/bkchem/bond.py", line 1117,
> in read_package
>      self.order = int( type[1])
> IndexError: string index out of range
> 
> Thanks, F.
> 
> 
> 
> 
> 
> 
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