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Need help with "Alternate GPT header not at the end of the disk."


From: Ralph Pursifull
Subject: Need help with "Alternate GPT header not at the end of the disk."
Date: Sun, 22 Nov 2009 12:15:06 -0800

Please help.   At boot time, we get:  "Alternate GPT header not at the end of the disk."

Google shows some situations like this are resolved by running parted and using "print" to trigger an offer of "Fix/Cancel". I don't get such an offer.

We have parted 1.8.8 on Fedora 10. There is an important XFS file system of 17TB spanning sdc (healthy) and sdd (sick). The only recent change was to add sde to scsi interface shared with sdd. Output from /var/log/messages and parted diagnostic print commands is below.

What should I do now to resolve this?  I would believe it is critical to resolve before I grow the file system to 25TB. Is it?

Thanks,
Ralph
address@hidden 


Nov 22 10:42:42 sleet kernel: express2: Found 2 adapters.
Nov 22 10:42:42 sleet kernel: scsi 5:0:0:0: Direct-Access     Promise  VTrak M310p      021F PQ: 0 ANSI: 5
Nov 22 10:42:42 sleet kernel: scsi: waiting for bus probes to complete ...
Nov 22 10:42:42 sleet kernel: scsi 5:0:3:0: Direct-Access     Promise  VTrak M310p      021F PQ: 0 ANSI: 5
Nov 22 10:42:42 sleet kernel: sd 4:0:0:0: [sdc] Very big device. Trying to use READ CAPACITY(16).
Nov 22 10:42:42 sleet kernel: sd 4:0:0:0: [sdc] 17578121472 512-byte hardware sectors (8999998 MB)
Nov 22 10:42:42 sleet kernel: sd 4:0:0:0: [sdc] Write Protect is off
Nov 22 10:42:42 sleet kernel: sd 4:0:0:0: [sdc] Write cache: enabled, read cache: enabled, supports DPO and FUA
Nov 22 10:42:42 sleet kernel: sd 4:0:0:0: [sdc] Very big device. Trying to use READ CAPACITY(16).
Nov 22 10:42:42 sleet kernel: sd 4:0:0:0: [sdc] 17578121472 512-byte hardware sectors (8999998 MB)
Nov 22 10:42:42 sleet kernel: sd 4:0:0:0: [sdc] Write Protect is off
Nov 22 10:42:42 sleet kernel: sd 4:0:0:0: [sdc] Write cache: enabled, read cache: enabled, supports DPO and FUA
Nov 22 10:42:42 sleet kernel: sdc: sdc1
Nov 22 10:42:42 sleet kernel: sd 4:0:0:0: [sdc] Attached SCSI disk
Nov 22 10:42:42 sleet kernel: sd 4:0:0:0: Attached scsi generic sg3 type 0
Nov 22 10:42:42 sleet kernel: sd 5:0:0:0: [sdd] Very big device. Trying to use READ CAPACITY(16).
Nov 22 10:42:42 sleet kernel: sd 5:0:0:0: [sdd] 17578123776 512-byte hardware sectors (8999999 MB)
Nov 22 10:42:42 sleet kernel: sd 5:0:0:0: [sdd] Write Protect is off
Nov 22 10:42:42 sleet kernel: sd 5:0:0:0: [sdd] Write cache: enabled, read cache: enabled, supports DPO and FUA
Nov 22 10:42:42 sleet kernel: sd 5:0:0:0: [sdd] Very big device. Trying to use READ CAPACITY(16).
Nov 22 10:42:42 sleet kernel: sd 5:0:0:0: [sdd] 17578123776 512-byte hardware sectors (8999999 MB)
Nov 22 10:42:42 sleet kernel: sd 5:0:0:0: [sdd] Write Protect is off
Nov 22 10:42:42 sleet kernel: sd 5:0:0:0: [sdd] Write cache: enabled, read cache: enabled, supports DPO and FUA
Nov 22 10:42:42 sleet kernel: sdd:<4>GPT:Primary header thinks Alt. header is not at the end of the disk.
Nov 22 10:42:42 sleet kernel: GPT:17578121471 != 17578123775
Nov 22 10:42:42 sleet kernel: GPT:Alternate GPT header not at the end of the disk.
Nov 22 10:42:42 sleet kernel: GPT:17578121471 != 17578123775
Nov 22 10:42:42 sleet kernel: GPT: Use GNU Parted to correct GPT errors.
Nov 22 10:42:42 sleet kernel: sdd1
Nov 22 10:42:42 sleet kernel: sd 5:0:0:0: [sdd] Attached SCSI disk
Nov 22 10:42:42 sleet kernel: sd 5:0:0:0: Attached scsi generic sg4 type 0
Nov 22 10:42:42 sleet kernel: sd 5:0:3:0: [sde] Very big device. Trying to use READ CAPACITY(16).
Nov 22 10:42:42 sleet kernel: sd 5:0:3:0: [sde] 17578121472 512-byte hardware sectors (8999998 MB)
Nov 22 10:42:42 sleet kernel: sd 5:0:3:0: [sde] Write Protect is off
Nov 22 10:42:42 sleet kernel: sd 5:0:3:0: [sde] Write cache: enabled, read cache: enabled, supports DPO and FUA
Nov 22 10:42:42 sleet kernel: sd 5:0:3:0: [sde] Very big device. Trying to use READ CAPACITY(16).
Nov 22 10:42:42 sleet kernel: sd 5:0:3:0: [sde] 17578121472 512-byte hardware sectors (8999998 MB)
Nov 22 10:42:42 sleet kernel: sd 5:0:3:0: [sde] Write Protect is off
Nov 22 10:42:42 sleet kernel: sd 5:0:3:0: [sde] Write cache: enabled, read cache: enabled, supports DPO and FUA
Nov 22 10:42:42 sleet kernel: sde: sde1
Nov 22 10:42:42 sleet kernel: sd 5:0:3:0: [sde] Attached SCSI disk
Nov 22 10:42:42 sleet kernel: sd 5:0:3:0: Attached scsi generic sg5 type 0
Nov 22 10:42:42 sleet kernel: device-mapper: multipath: version 1.0.5 loaded
Nov 22 10:42:42 sleet kernel: EXT3 FS on dm-0, internal journal

##################################################################################
            sdd is the problematic array
##################################################################################
address@hidden ~]# parted /dev/sdd print unit s print unit chs print
Model: Promise VTrak M310p (scsi)
Disk /dev/sdd: 9000GB
Sector size (logical/physical): 512B/512B
Partition Table: gpt

Number  Start   End     Size    File system  Name     Flags
 1      17.4kB  9000GB  9000GB               SLEET02  lvm

Model: Promise VTrak M310p (scsi)
Disk /dev/sdd: 17578123776s
Sector size (logical/physical): 512B/512B
Partition Table: gpt

Number  Start  End           Size          File system  Name     Flags
 1      34s    17578121438s  17578121405s               SLEET02  lvm

Model: Promise VTrak M310p (scsi)
Disk /dev/sdd: 1094187,152,44
Sector size (logical/physical): 512B/512B
BIOS cylinder,head,sector geometry: 1094187,255,63.  Each cylinder is 8225kB.
Partition Table: gpt

Number  Start   End             File system  Name     Flags
 1      0,0,34  1094187,115,38               SLEET02  lvm

##################################################################################
            sdc and others seem to be healthy
##################################################################################

address@hidden ~]# parted /dev/sdc print unit s print unit chs print
Model: Promise VTrak M310p (scsi)
Disk /dev/sdc: 9000GB
Sector size (logical/physical): 512B/512B
Partition Table: gpt

Number  Start   End     Size    File system  Name     Flags
 1      17.4kB  9000GB  9000GB               SLEET01  lvm

Model: Promise VTrak M310p (scsi)
Disk /dev/sdc: 17578121472s
Sector size (logical/physical): 512B/512B
Partition Table: gpt

Number  Start  End           Size          File system  Name     Flags
 1      34s    17578121438s  17578121405s               SLEET01  lvm

Model: Promise VTrak M310p (scsi)
Disk /dev/sdc: 1094187,116,8
Sector size (logical/physical): 512B/512B
BIOS cylinder,head,sector geometry: 1094187,255,63.  Each cylinder is 8225kB.
Partition Table: gpt

Number  Start   End             File system  Name     Flags
 1      0,0,34  1094187,115,38               SLEET01  lvm


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