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RE: confiig.guess problem
From: |
Van Nam Hoang |
Subject: |
RE: confiig.guess problem |
Date: |
Sat, 14 Jun 2014 03:03:55 +0000 |
Thanks,
I have updated the config.guess and config.sub, and was able to run ./configure.
However it gave me the message as follows. And I can run make (error 2, and
error 5).
Could you give me some advices on this?
./CONFIGURE
-----------------------------------------
/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build/corelib/ncbicfg.c
is updated
Prebuilt project_tree_builder not found
===============================================================================
NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running
For the available configuration flags run: ./configure --help
CFLAGS = -Wall -Wno-format-y2k -O2
CXXFLAGS = -Wall -Wno-format-y2k -O2
CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE
-D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE
LDFLAGS = -Wl,-rpath,/usr/lib/gcc/x86_64-pc-cygwin/4.8.3 -O
LIBRARIES: build as static only
FEATURES: MT unix WinMain Cygwin CygwinMT
PACKAGES:
enabled: UUID Z BZ2 LZO PCRE GNUTLS OPENSSL MySQL BerkeleyDB BerkeleyDB++
PYTHON Boost.Spirit Boost.Test.Included OpenGL MESA GLUT ICU EXPAT LIBXML
LIBXSLT Xerces SQLITE3 HDF5 JPEG PNG TIFF GIF XPM FreeType
disabled: LocalZ LocalBZ2 LocalPCRE Sybase DBLib FreeTDS ODBC PYTHON23
PYTHON24 PYTHON25 CPPUNIT Boost.Regex Boost.Test Boost.Threads C-Toolkit FLTK
wxWindows wxWidgets wx2.8 Fast-CGI LocalSSS LocalNCBILS LocalMSGMAIL2 SSSUTILS
SSSDB SP ORBacus SABLOT Xalan SQLITE SQLITE3ASYNC OECHEM SGE MUPARSER UNGIF
PROJECTS:
enabled: cgi connext ncbi_crypt serial objects dbapi app algo
disabled: local_lbsm bdb ctools gui gbench
Tools / flags / paths:
/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build/Makefile.mk
Configuration header:
/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/inc/ncbiconf_unix.h
To build everything: cd
/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build
&& make all_r
or simply run make in the current directory
******* CONFIGURATION SUCCESSFUL *******
--------------------------------
MAKE
make[6]: Leaving directory
'/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build/corelib'
/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build/Makefile.meta:191:
recipe for target 'all.nonusr' failed
make[5]: *** [all.nonusr] Error 2
make[5]: Leaving directory
'/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build/corelib'
/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build/Makefile.meta:183:
recipe for target 'all.real' failed
make[4]: *** [all.real] Error 2
make[4]: Leaving directory
'/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build/corelib'
/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build/Makefile.meta:241:
recipe for target 'all_r.needs-reqs' failed
make[3]: *** [all_r.needs-reqs] Error 2
make[3]: Leaving directory
'/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build/corelib'
Makefile.meta:290: recipe for target 'all_r.real' failed
make[2]: *** [all_r.real] Error 5
make[2]: Leaving directory
'/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build'
Makefile.meta:241: recipe for target 'all_r.needs-reqs' failed
make[1]: *** [all_r.needs-reqs] Error 2
make[1]: Leaving directory
'/cygdrive/c/Users/s4278679/Desktop/JellyfishandCygwin/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC483-ReleaseMT64/build'
Makefile:22: recipe for target 'all' failed
make: *** [all] Error 2
-----------------------------------
Thank you very much.
-----Original Message-----
From: Yann Droneaud [mailto:address@hidden
Sent: Friday, 13 June 2014 11:28 PM
To: Van Nam Hoang
Cc: address@hidden
Subject: Re: confiig.guess problem
Hi,
Le vendredi 13 juin 2014 à 12:08 +0000, Van Nam Hoang a écrit :
> config.guess timestamp = 2003-02-22
>
commit 64c794e628df3db19e11f10ae876f71cef815603
Author: Ben Elliston <address@hidden>
Date: Thu Feb 10 03:37:55 2005 +0000
* config.guess (amd64:CYGWIN*:*:*): New.
* testsuite/config-sub.data: Add amd64-cygwin, x86_64-cygwin.
* testsuite/config-guess.data: Add x86_64-unknown-cygwin test.
So try to grab an updated config.guess script released after 2005-02-10.
>
>
> uname -m = x86_64
>
> uname -r = 1.7.30(0.272/5/3)
>
> uname -s = CYGWIN_NT-6.1
>
> uname -v = 2014-05-23 10:36
>
>
>
> /usr/bin/uname -p = unknown
>
> /bin/uname -X =
>
>
>
> hostinfo =
>
> /bin/universe =
>
> /usr/bin/arch -k =
>
> /bin/arch = x86_64
>
> /usr/bin/oslevel =
>
> /usr/convex/getsysinfo =
>
>
>
> UNAME_MACHINE = x86_64
>
> UNAME_RELEASE = 1.7.30(0.272/5/3)
>
> UNAME_SYSTEM = CYGWIN_NT-6.1
>
> UNAME_VERSION = 2014-05-23 10:36
>
> configure: error: cannot guess build type; you must specify one
Regards.
--
Yann Droneaud
OPTEYA