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Re: [O] [babel] [bug] inline src_R breaks downstream src block


From: Eric Schulte
Subject: Re: [O] [babel] [bug] inline src_R breaks downstream src block
Date: Sun, 21 Aug 2011 12:35:51 -0600
User-agent: Gnus/5.13 (Gnus v5.13) Emacs/24.0.50 (gnu/linux)

Bastien <address@hidden> writes:

> Hi Charles,
>
> yes, there are some problems with parsing inline source blocks.  
> Stephen also reported that these colon lines
>
>   : were $\beta_2$ = src_R{round(out3$coef[3], 4)}
>   : and $\beta_3$ = src_R{round(out3$coef[4], 4)}
>
> where not exporting correctly... Eric, can you have a look at
> these problems?
>
> Thanks!
>

It will probably be a couple of days before I have sufficient time to
address these issues, but rest assured it is only my TODO list.

Thanks -- Eric

>
> "Charles C. Berry" <address@hidden> writes:
>
>> ,----
>> | | * inline code block example
>> | | | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>> | blah blah src_R[:results output]{cat(rnorm(2))}
>> | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>> | #+begin_src R :eval never :exports none
>> | 1+2
>> | a <- b + c
>> | xyz
>> | #+end_src
>> | DDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDDD
>> `----
>>
>>
>> When I run C-c C-e A y, I get a buffer that misses the 'DDD...' line.
>>
>> When I run C-c C-e L y, I get a buffer that ends like this:
>>
>> ----
>> | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
>> | blah blah  \texttt{-1.172165 -0.5324113}
>> | CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>> | \begin{src}R DDDDDDDDDDDDDDDDDDDDDDDDDDD
>> | | \end{document}
>> `----
>>
>> More complicated examples exhibit other problems, I speculate that
>> parsing the inline src_R and setting up to find the next
>> #+begin_src...#+end_src instance is what has gone wrong.
>>
>> FWIW, changing the :exports header to 'code' seems to give correct
>> results
>>
>> Also, placing a dummy example like this:
>>
>> ,----
>> | #+begin_example
>> | #+end_example
>> `----
>>
>> after the  src_R line produces correct results.
>>
>> Chuck
>>
>>
>> Charles C. Berry                            Dept of Family/Preventive 
>> Medicine
>> address@hidden                           UC San Diego
>> http://famprevmed.ucsd.edu/faculty/cberry/  La Jolla, San Diego 92093-0901
>>
>>
>>
>>

-- 
Eric Schulte
http://cs.unm.edu/~eschulte/



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