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Re: [O] Error exporting org-ref.org to LaTeX (was: Re: Warnings while in
From: |
John Kitchin |
Subject: |
Re: [O] Error exporting org-ref.org to LaTeX (was: Re: Warnings while installing org-ref) |
Date: |
Fri, 02 Jun 2017 15:45:15 -0400 |
User-agent: |
mu4e 0.9.19; emacs 25.2.1 |
I updated the documentation on the build requirements.
Lars Bjørndal writes:
> Thank you. You wrote:
>
>> You might have to require org-id and a few other org-ref libs for wos,
>> Scopus and arxiv links. See the notes near the end of that document. I
>> am traveling sans emacs right now so I don't have the exact place to
>> look, but it is in a section on alternate builds I think.
>
> Yes, I got it.
>
> Please note that `org-id' is not mentioned in the org-ref.org file.
>
> The .tex file is now prduced without errors/warnings. The pdf is
> produced as well, but with warnings. Some of them are:
>
> Package glossaries Warning: No \printglossary or \printglossaries
> found.
> (Remove \makeglossaries if you don't want any glossaries.)
> This document will not have a glossary.
>
> LaTeX Warning: There were undefined references.
>
> Thanks and regards, Lars
>
>
>> On Sat, May 27, 2017 at 4:52 PM Lars Bjørndal <address@hidden>
>> wrote:
>>
>> On Fri, May 26, 2017 at 04:06:52PM -0400, John Kitchin wrote:
>> > I pushed a bunch of commits today to clean up a lot of these.
>> There are
>> > still a few that I don't know how to get rid of, but it should be
>> a lot
>> > cleaner now.
>> Thanks a lot.
>> To learn Org, Org-ref and exports, I tried to export the
>> [2]org-ref.org
>> to LaTeX. The .tex file is produced, but I get the following error
>> message:
>> user-error: Unable to resolve link:
>> "id:212B487E-CC38-4BDF-9F0E-6993845AF49B"
>> What does that mean?
>> Thanks and regards, Lars
>> > Lars Bjørndal writes:
>> >
>> > > I installed org-ref from Elpa, and I got some warnings. Emacs
>> version:
>> > >
>> > > GNU Emacs 25.2.1 (x86_64-redhat-linux-gnu, GTK+ Version 3.20.10)
>> of 2017-05-02
>> > >
>> > > I'm not sure how critical these error messages are.
>> > >
>> > > Fri May 26 14:59:37 2017
>> > > Entering directory
>> `/home/tstl/.emacs.d/elpa/key-chord-20160227.438/'
>> > >
>> > > In key-chord-input-method:
>> > > key-chord.el:341:16:Warning: sit-for called with 3 arguments,
>> but
>> > > accepts only
>> > > 1-2
>> > > i May 26 14:59:45 2017
>> > > Entering directory
>> `/home/tstl/.emacs.d/elpa/helm-core-20170526.36/'
>> > >
>> > > In helm-position:
>> > > helm-lib.el:388:14:Warning: macro `helm-position' defined too
>> late
>> > >
>> > > In end of data:
>> > > helm-lib.el:1006:1:Warning: the following functions are not
>> known to be
>> > > defined\
>> > > :
>> > > helm-interpret-value, helm-get-current-source
>> > >
>> > > Compiling file
>> > >
>> /home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/bibtex-comple\
>> > > tion.el at Fri May 26 14:59:54 2017
>> > > Entering directory
>> `/home/tstl/.emacs.d/elpa/helm-bibtex-20170321.1306/'
>> > >
>> > > In end of data:
>> > > bibtex-completion.el:1210:1:Warning: the following functions are
>> not
>> > > known to b\
>> > > e defined:
>> > > reftex-what-macro, org-find-property,
>> > > reftex-locate-bibliography-files
>> > >
>> > > Entering directory
>> `/home/tstl/.emacs.d/elpa/org-ref-20170523.1821/'
>> > >
>> > > In end of data:
>> > > doi-utils.el:1361:1:Warning: the following functions are not
>> known to be
>> > > define\
>> > > d:
>> > > org-ref-find-bibliography, reftex-get-bib-field,
>> > > org-ref-bib-citation
>> > >
>> > > Compiling file
>> > >
>> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-bibtex.el\
>> > > at Fri May 26 14:59:57 2017
>> > >
>> > > In org-ref-bibtex-assoc-pdf-with-entry:
>> > > org-ref-bibtex.el:728:25:Warning: reference to free variable
>> > > `org-ref-pdf-directory'
>> > >
>> > > In orhc-bibtex-field-formatter:
>> > > org-ref-bibtex.el:1092:27:Warning: reference to free variable
>> > > `org-ref-pdf-directory'
>> > > org-ref-bibtex.el:1098:27:Warning: reference to free
>> variable
>> > > `org-ref-notes-directory'
>> > >
>> > > In end of data:
>> > > org-ref-bibtex.el:1324:1:Warning: the following functions are
>> not known
>> > > to be d\
>> > > efined:
>> > > reftex-get-bib-field, org-ref-find-bibliography
>> > >
>> > > Compiling file
>> > >
>> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-citeproc.\
>> > > el at Fri May 26 14:59:57 2017
>> > >
>> > > In end of data:
>> > > org-ref-citeproc.el:919:1:Warning: the function
>> > > `org-ref-get-bibtex-key-and-file' is not known to be
>> defined.
>> > >
>> > > Compiling file
>> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-core.el
>> a\
>> > > t Fri May 26 14:59:57 2017
>> > >
>> > > In org-ref-update-pre-post-text:
>> > > org-ref-core.el:3259:16:Warning: `delete-backward-char' is for
>> > > interactive use
>> > > only; use `delete-char' instead.
>> > > org-ref-core.el:3260:12:Warning: `delete-backward-char' is
>> for
>> > > interactive use
>> > > only; use `delete-char' instead.
>> > >
>> > > In end of data:
>> > > org-ref-core.el:3498:1:Warning: the following functions are not
>> known to
>> > > be def\
>> > > ined:
>> > > org-ref-match-next-cite-link, org-ref-match-next-label-link,
>> > > org-ref-match-next-ref-link,
>> > > org-ref-make-org-link-cite-key-visible,
>> > > org-in-commented-heading-p
>> > >
>> > > Compiling file
>> > >
>> /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm-bibt\
>> > > ex.el at Fri May 26 14:59:58 2017
>> > >
>> > > In org-ref-format-citation:
>> > > org-ref-helm-bibtex.el:308:22:Warning: assignment to free
>> variable `end'
>> > > org-ref-helm-bibtex.el:313:37:Warning: assignment to free
>> variable
>> > > `path'
>> > > org-ref-helm-bibtex.el:313:37:Warning: reference to free
>> variable `end'
>> > > org-ref-helm-bibtex.el:311:16:Warning: looking-back called with
>> 1
>> > > argument,
>> > > but requires 2-3
>> > > org-ref-helm-bibtex.el:313:18:Warning: reference to free
>> variable
>> > > `path'
>> > >
>> > > In org-ref-helm-load-completions-async:
>> > > org-ref-helm-bibtex.el:367:22:Warning: assignment to free
>> variable
>> > > `bibtex-completion-cached-candidates'
>> > > org-ref-helm-bibtex.el:371:20:Warning: assignment to free
>> variable
>> > > `bibtex-completion-bibliography-hash'
>> > >
>> > > In org-ref-browser:
>> > > org-ref-helm-bibtex.el:681:20:Warning: `show-all' is an obsolete
>> > > function (as
>> > > of 25.1); use `outline-show-all' instead.
>> > > org-ref-helm-bibtex.el:712:61:Warning: assignment to free
>> variable
>> > > `count-key-pos'
>> > > org-ref-helm-bibtex.el:715:68:Warning: reference to free
>> > > variable
>> > > `count-key-pos'
>> > >
>> > > Compiling file
>> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-helm.el
>> a\
>> > > t Fri May 26 14:59:58 2017
>> > >
>> > > In org-ref:
>> > > org-ref-helm.el:289:78:Error: `add-to-list' can't use lexical
>> var
>> > > `matches';
>> > > use `push' or `cl-pushnew'
>> > > org-ref-helm.el:317:54:Error: `add-to-list' can't use
>> lexical var
>> > > `matches';
>> > > use `push' or `cl-pushnew'
>> > > org-ref-helm.el:306:39:Error: `add-to-list' can't use
>> lexical
>> > > var `matches';
>> > > use `push' or `cl-pushnew'
>> > > org-ref-helm.el:380:47:Warning: reference to free
>> variable
>> > > `org-latex-prefer-user-labels'
>> > >
>> > > Compiling file
>> > > /home/tstl/.emacs.d/elpa/org-ref-20170523.1821/org-ref-pdf.el
>> at\
>> > > Fri May 26 14:59:59 2017
>> > >
>> > > In end of data:
>> > > org-ref-pdf.el:248:1:Warning: the following functions are not
>> known to
>> > > be defin\
>> > > ed:
>> > > pdf-view-assert-active-region, pdf-view-active-region-text,
>> > > pdf-view-deactivate-region
>> > >
>> > > Lars
>> >
>> >
>> > --
>> > Professor John Kitchin
>> > Doherty Hall A207F
>> > Department of Chemical Engineering
>> > Carnegie Mellon University
>> > Pittsburgh, PA 15213
>> > 412-268-7803
>> > @johnkitchin
>> > [3]http://kitchingroup.cheme.cmu.edu
>> >
>>
>> --
>>
>> John
>> -----------------------------------
>> Professor John Kitchin
>> Doherty Hall A207F
>> Department of Chemical Engineering
>> Carnegie Mellon University
>> Pittsburgh, PA 15213
>> 412-268-7803
>> @johnkitchin
>> [4]http://kitchingroup.cheme.cmu.edu
>>
>> References
>>
>> 1. mailto:address@hidden
>> 2. http://org-ref.org/
>> 3. http://kitchingroup.cheme.cmu.edu/
>> 4. http://kitchingroup.cheme.cmu.edu/
--
Professor John Kitchin
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-268-7803
@johnkitchin
http://kitchingroup.cheme.cmu.edu
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