[Espressomd-maintainer] Build failed in Jenkins: ESPResSo-distcheck #61

[olenz]

See <http://espressomd.org/jenkins/job/ESPResSo-distcheck/61/>

------------------------------------------
[...truncated 114 lines...]
checking for working strtod... yes
checking for atexit... yes
checking for floor... yes
checking for getcwd... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... yes
checking for rint... yes
checking for select... yes
checking for socket... yes
checking for sqrt... yes
****************************************************************
*         Checking for required tools and libraries            *
****************************************************************
checking for libtcl8.6... no
checking for libtcl8.5... yes
checking for tcl.h... yes
checking whether to use FFTW... guess
checking for library containing fftw_plan_many_dft... -lfftw3
checking fftw3.h usability... yes
checking fftw3.h presence... yes
checking for fftw3.h... yes
checking whether to use CUDA... no
****************************************************************
*                   Other settings                             *
****************************************************************
checking whether to use efence... no
checking the name of the configuration header... myconfig.h
checking the number of available CPUs... 8 
****************************************************************
*                   Creating output files                      *
****************************************************************
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating tools/Makefile
config.status: creating scripts/Makefile
config.status: creating testsuite/Makefile
config.status: creating testsuite/configs/Makefile
config.status: creating doc/Makefile
config.status: creating doc/dg/Makefile
config.status: creating doc/ug/Makefile
config.status: creating doc/tutorials/Makefile
config.status: creating doc/tutorials/tut2/Makefile
config.status: creating doc/latexit.sh
config.status: creating myconfig-sample.h
config.status: creating testsuite/runtest.sh
config.status: creating tools/es_mpiexec
config.status: creating src/acconfig.h
config.status: executing depfiles commands
****************************************************************
*                   Configuration summary                      *
****************************************************************
platform detected       = x86_64-unknown-linux-gnu

Compiler settings:
------------------
compiler                = mpicc -std=gnu99
linker                  = 
c compiler flags        = 
c preprocessor flags    = 
linker flags            = 
libraries               = -lfftw3 -ltcl8.5  -lm
using debug flags       = 
using profiling flags   = 
inline                  = 

Libraries:
----------
Tcl version             = tcl8.5
Tk version              = none
FFTW                    = yes
efence                  = no

Other settings:
---------------
local config header     = myconfig.h
installation prefix     = /home/jenkins/Espresso
number of test tasks    = 8
mympiexec               = 
<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/mympiexec.sh>
mpiexec                 = /usr/lib64/mpi/gcc/openmpi/bin/mpiexec
pdflatex                = /usr/bin/pdflatex
makeindex               = /usr/bin/makeindex
bibtex                  = /usr/bin/bibtex
doxygen                 = /usr/local/bin/doxygen
dot                     = /usr/bin/dot

CUDA disabled or not supported.
+ make -j 2 distcheck DISTCHECK_CONFIGURE_FLAGS=CPU_COUNT=2
{ test ! -d "espresso-3.0.0" || { find "espresso-3.0.0" -type d ! -perm -200 
-exec chmod u+w {} ';' && rm -fr "espresso-3.0.0"; }; }
test -d "espresso-3.0.0" || mkdir "espresso-3.0.0"
 (cd src && make  top_distdir=../espresso-3.0.0 distdir=../espresso-3.0.0/src \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/src'>
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/src'>
 (cd scripts && make  top_distdir=../espresso-3.0.0 
distdir=../espresso-3.0.0/scripts \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/scripts'>
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/scripts'>
 (cd tools && make  top_distdir=../espresso-3.0.0 
distdir=../espresso-3.0.0/tools \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/tools'>
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/tools'>
 (cd testsuite && make  top_distdir=../espresso-3.0.0 
distdir=../espresso-3.0.0/testsuite \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/testsuite'>
 (cd configs && make  top_distdir=../../espresso-3.0.0 
distdir=../../espresso-3.0.0/testsuite/configs \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/testsuite/configs'>
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/testsuite/configs'>
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/testsuite'>
 (cd doc && make  top_distdir=../espresso-3.0.0 distdir=../espresso-3.0.0/doc \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[1]: Entering directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/doc'>
 (cd dg && make  top_distdir=../../espresso-3.0.0 
distdir=../../espresso-3.0.0/doc/dg \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/doc/dg'>
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/doc/dg'>
 (cd ug && make  top_distdir=../../espresso-3.0.0 
distdir=../../espresso-3.0.0/doc/ug \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/doc/ug'>
cd .; \
                gawk -f assemble_quickref.awk ug.tex introduction.tex 
firststeps.tex installation.tex part.tex inter.tex setup.tex run.tex 
analysis.tex io.tex lb.tex maggs.tex aux.tex internal.tex contributing.tex 
quickref.tex features.tex examples.tex mmm.tex mbtools.tex \
                        > 
<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/doc/ug/quickref.inp>
sh ../latexit.sh . ug
Running LaTeX stage 1...
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/openSUSE)
entering extended mode
Running bibtex...
This is BibTeX, Version 0.99c (TeX Live 2009/openSUSE)
The top-level auxiliary file: ug.aux
A level-1 auxiliary file: introduction.aux
A level-1 auxiliary file: firststeps.aux
A level-1 auxiliary file: installation.aux
A level-1 auxiliary file: part.aux
A level-1 auxiliary file: inter.aux
A level-1 auxiliary file: setup.aux
A level-1 auxiliary file: run.aux
A level-1 auxiliary file: analysis.aux
A level-1 auxiliary file: io.aux
A level-1 auxiliary file: aux.aux
A level-1 auxiliary file: lb.aux
A level-1 auxiliary file: mbtools.aux
A level-1 auxiliary file: internal.aux
A level-1 auxiliary file: contributing.aux
A level-1 auxiliary file: quickref.aux
A level-1 auxiliary file: features.aux
A level-1 auxiliary file: examples.aux
A level-1 auxiliary file: maggs.aux
A level-1 auxiliary file: mmm.aux
The style file: plainnat.bst
Database file #1: bibliography.bib
Running LaTeX stage 2...
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/openSUSE)
entering extended mode
Running LaTeX stage 3...
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/openSUSE)
entering extended mode
See LaTeX output in ug.log.
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/doc/ug'>
 (cd tutorials && make  top_distdir=../../espresso-3.0.0 
distdir=../../espresso-3.0.0/doc/tutorials \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[2]: Entering directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/doc/tutorials'>
 (cd tut2 && make  top_distdir=../../../espresso-3.0.0 
distdir=../../../espresso-3.0.0/doc/tutorials/tut2 \
     am__remove_distdir=: am__skip_length_check=: am__skip_mode_fix=: distdir)
make[3]: Entering directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/doc/tutorials/tut2'>
sh ../../latexit.sh .:./../common tut2
Running LaTeX stage 1...
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/openSUSE)
entering extended mode
Running bibtex...
This is BibTeX, Version 0.99c (TeX Live 2009/openSUSE)
The top-level auxiliary file: tut2.aux
I found no \citation commands---while reading file tut2.aux
I found no \bibdata command---while reading file tut2.aux
I found no \bibstyle command---while reading file tut2.aux
(There were 3 error messages)
Running LaTeX stage 2...
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/openSUSE)
entering extended mode
Running LaTeX stage 3...
This is pdfTeX, Version 3.1415926-1.40.10 (TeX Live 2009/openSUSE)
entering extended mode
See LaTeX output in tut2.log.
make[3]: Leaving directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/doc/tutorials/tut2'>
make[2]: Leaving directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/doc/tutorials'>
make[1]: Leaving directory 
`<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/doc'>
test -n "" \
        || find "espresso-3.0.0" -type d ! -perm -755 \
                -exec chmod u+rwx,go+rx {} \; -o \
          ! -type d ! -perm -444 -links 1 -exec chmod a+r {} \; -o \
          ! -type d ! -perm -400 -exec chmod a+r {} \; -o \
          ! -type d ! -perm -444 -exec /bin/sh 
<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/config/install-sh> -c 
-m a+r {} {} \; \
        || chmod -R a+r "espresso-3.0.0"
tardir=espresso-3.0.0 && /bin/sh 
<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/config/missing> --run 
tar chof - "$tardir" | GZIP=--best gzip -c >espresso-3.0.0.tar.gz
{ test ! -d "espresso-3.0.0" || { find "espresso-3.0.0" -type d ! -perm -200 
-exec chmod u+w {} ';' && rm -fr "espresso-3.0.0"; }; }
case 'espresso-3.0.0.tar.gz' in \
        *.tar.gz*) \
          GZIP=--best gzip -dc espresso-3.0.0.tar.gz | /bin/sh 
<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/config/missing> --run 
tar xf - ;;\
        *.tar.bz2*) \
          bzip2 -dc espresso-3.0.0.tar.bz2 | /bin/sh 
<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/config/missing> --run 
tar xf - ;;\
        *.tar.lzma*) \
          lzma -dc espresso-3.0.0.tar.lzma | /bin/sh 
<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/config/missing> --run 
tar xf - ;;\
        *.tar.xz*) \
          xz -dc espresso-3.0.0.tar.xz | /bin/sh 
<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/config/missing> --run 
tar xf - ;;\
        *.tar.Z*) \
          uncompress -c espresso-3.0.0.tar.Z | /bin/sh 
<http://espressomd.org/jenkins/job/ESPResSo-distcheck/ws/config/missing> --run 
tar xf - ;;\
        *.shar.gz*) \
          GZIP=--best gzip -dc espresso-3.0.0.shar.gz | unshar ;;\
        *.zip*) \
          unzip espresso-3.0.0.zip ;;\
        esac
chmod -R a-w espresso-3.0.0; chmod a+w espresso-3.0.0
mkdir espresso-3.0.0/_build
mkdir espresso-3.0.0/_inst
chmod a-w espresso-3.0.0
test -d espresso-3.0.0/_build || exit 0; \
        dc_install_base=`CDPATH="${ZSH_VERSION+.}:" && cd espresso-3.0.0/_inst 
&& pwd | sed -e 's,^[^:\\/]:[\\/],/,'` \
          && dc_destdir="${TMPDIR-/tmp}/am-dc-$$/" \
          && am__cwd=`pwd` \
          && CDPATH="${ZSH_VERSION+.}:" && cd espresso-3.0.0/_build \
          && ../configure --srcdir=.. --prefix="$dc_install_base" \
            CPU_COUNT=2 \
          && make  \
          && make  dvi \
          && make  check \
          && make  install \
          && make  installcheck \
          && make  uninstall \
          && make  distuninstallcheck_dir="$dc_install_base" \
                distuninstallcheck \
          && chmod -R a-w "$dc_install_base" \
          && ({ \
               (cd ../.. && umask 077 && mkdir "$dc_destdir") \
               && make  DESTDIR="$dc_destdir" install \
               && make  DESTDIR="$dc_destdir" uninstall \
               && make  DESTDIR="$dc_destdir" \
                    distuninstallcheck_dir="$dc_destdir" distuninstallcheck; \
              } || { rm -rf "$dc_destdir"; exit 1; }) \
          && rm -rf "$dc_destdir" \
          && make  dist \
          && rm -rf espresso-3.0.0.tar.gz \
          && make  distcleancheck \
          && cd "$am__cwd" \
          || exit 1
/bin/sh: line 5: ../configure: Permission denied
make: *** [distcheck] Error 1
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving artifacts