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Re: [ESPResSo] MPI issue
|
From: |
Tristan Bereau |
|
Subject: |
Re: [ESPResSo] MPI issue |
|
Date: |
Wed, 03 Oct 2007 10:04:51 -0400 |
|
User-agent: |
Thunderbird 2.0.0.6 (X11/20070801) |
Hi,
Thanks for your answer.
I looked at the config.log (attached). First, it looks like mpirun,
mpicc, and mpich are recognized pretty much everywhere in the file.
But looking carefully towards the end of the file (~line 1200), there is:
MPI_FAKE_FALSE=''
MPI_FAKE_TRUE='#'
which doesn't look right to me at all (unless a '#' sign means a 'no'...?)!
It's strange, because it did find all the relevant mpi files on my computer.
I tried reinstalling OpenMPI (1.2.3), but it still does the same problem.
Is there some trick to solve that?
Thanks,
Tristan
Kai Grass wrote:
> Hi,
>
> I can't really comment on your problem, but I can tell you, that I
> compiled Espresso using OpenMPI (Version 1.2.3) on Mac (Intel Dual
> Core) and on a Sunfire Cluster. Both versions work fine, so in
> principle it should also work for you.
>
>> mpirun -np 4 ~/Espresso/obj-XXX/Espresso_bin my_script.tcl
>
> That is the correct call (which in fact is also issued by the Espresso
> wrapper).
>
> To analyze your problem, it would help to have the config.log from
> Espresso. It looks like it didn't find the MPI libraries at compile
> time and resorted to the fake MPI implementation.
>
> Greetings,
> Kai
>
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by ESPResSo configure-ac 2.0.3t, which was
generated by GNU Autoconf 2.61. Invocation command line was
$ ../configure-ac --enable-chooser
## --------- ##
## Platform. ##
## --------- ##
hostname = harry
uname -m = i686
uname -r = 2.6.16.53-0.8-smp
uname -s = Linux
uname -v = #1 SMP Fri Aug 31 13:07:27 UTC 2007
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = i686
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/local/bin
PATH: /home/tbereau/Espresso/
PATH: /usr/local/bin
PATH: /home/tbereau/Espresso/
PATH: /usr/local/bin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /usr/X11R6/bin
PATH: /bin
PATH: /usr/games
PATH: /opt/gnome/bin
PATH: /opt/kde3/bin
PATH: /opt/cross/bin
PATH: /opt/intel/cc/9.1.047/bin
PATH: /opt/intel/idb/9.1.047/bin
PATH: /opt/intel/fc/9.1.045/bin
PATH: /opt/intel/idb/9.1.045/bin
PATH: /usr/lib/mit/bin
PATH: /usr/lib/mit/sbin
PATH: /opt/pbs/bin
PATH: /usr/lib/qt3/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure-ac:1856: checking build system type
configure-ac:1874: result: Pentium_4_64-pc-linux
configure-ac:1896: checking host system type
configure-ac:1911: result: Pentium_4_64-pc-linux
configure-ac:1933: checking target system type
configure-ac:1948: result: Pentium_4_64-pc-linux
configure-ac:1993: checking for a BSD-compatible install
configure-ac:2049: result: /usr/bin/install -c
configure-ac:2060: checking whether build environment is sane
configure-ac:2103: result: yes
configure-ac:2131: checking for a thread-safe mkdir -p
configure-ac:2170: result: /bin/mkdir -p
configure-ac:2183: checking for gawk
configure-ac:2199: found /usr/bin/gawk
configure-ac:2210: result: gawk
configure-ac:2221: checking whether make sets $(MAKE)
configure-ac:2242: result: yes
configure-ac:2430: checking whether to enable maintainer-specific portions of
Makefiles
configure-ac:2439: result: no
configure-ac:2476: checking for style of include used by make
configure-ac:2504: result: GNU
configure-ac:2574: checking for gcc
configure-ac:2590: found /usr/local/bin/gcc
configure-ac:2601: result: gcc
configure-ac:2839: checking for C compiler version
configure-ac:2846: gcc --version >&5
gcc (GCC) 4.1.0 (SUSE Linux)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure-ac:2849: $? = 0
configure-ac:2856: gcc -v >&5
Using built-in specs.
Target: i586-suse-linux
Configured with: ../configure --enable-threads=posix --prefix=/usr
--with-local-prefix=/usr/local --infodir=/usr/share/info
--mandir=/usr/share/man --libdir=/usr/lib --libexecdir=/usr/lib
--enable-languages=c,c++,objc,fortran,java,ada --enable-checking=release
--with-gxx-include-dir=/usr/include/c++/4.1.0 --enable-ssp --disable-libssp
--enable-java-awt=gtk --enable-gtk-cairo --disable-libjava-multilib
--with-slibdir=/lib --with-system-zlib --enable-shared --enable-__cxa_atexit
--enable-libstdcxx-allocator=new --without-system-libunwind --with-cpu=generic
--host=i586-suse-linux
Thread model: posix
gcc version 4.1.0 (SUSE Linux)
configure-ac:2859: $? = 0
configure-ac:2866: gcc -V >&5
gcc: '-V' option must have argument
configure-ac:2869: $? = 1
configure-ac:2892: checking for C compiler default output file name
configure-ac:2919: gcc conftest.c >&5
configure-ac:2922: $? = 0
configure-ac:2960: result: a.out
configure-ac:2977: checking whether the C compiler works
configure-ac:2987: ./a.out
configure-ac:2990: $? = 0
configure-ac:3007: result: yes
configure-ac:3014: checking whether we are cross compiling
configure-ac:3016: result: no
configure-ac:3019: checking for suffix of executables
configure-ac:3026: gcc -o conftest conftest.c >&5
configure-ac:3029: $? = 0
configure-ac:3053: result:
configure-ac:3059: checking for suffix of object files
configure-ac:3085: gcc -c conftest.c >&5
configure-ac:3088: $? = 0
configure-ac:3111: result: o
configure-ac:3115: checking whether we are using the GNU C compiler
configure-ac:3144: gcc -c conftest.c >&5
configure-ac:3150: $? = 0
configure-ac:3167: result: yes
configure-ac:3171: checking for gcc option to accept ISO C89
configure-ac:3245: gcc -c conftest.c >&5
configure-ac:3251: $? = 0
configure-ac:3274: result: none needed
configure-ac:3294: checking dependency style of gcc
configure-ac:3385: result: gcc3
configure-ac:3405: checking how to run the C preprocessor
configure-ac:3445: gcc -E conftest.c
configure-ac:3451: $? = 0
configure-ac:3482: gcc -E conftest.c
conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
configure-ac:3488: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure-ac:3521: result: gcc -E
configure-ac:3550: gcc -E conftest.c
configure-ac:3556: $? = 0
configure-ac:3587: gcc -E conftest.c
conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
configure-ac:3593: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure-ac:3678: checking for gcc
configure-ac:3705: result: gcc
configure-ac:3943: checking for C compiler version
configure-ac:3950: gcc --version >&5
gcc (GCC) 4.1.0 (SUSE Linux)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure-ac:3953: $? = 0
configure-ac:3960: gcc -v >&5
Using built-in specs.
Target: i586-suse-linux
Configured with: ../configure --enable-threads=posix --prefix=/usr
--with-local-prefix=/usr/local --infodir=/usr/share/info
--mandir=/usr/share/man --libdir=/usr/lib --libexecdir=/usr/lib
--enable-languages=c,c++,objc,fortran,java,ada --enable-checking=release
--with-gxx-include-dir=/usr/include/c++/4.1.0 --enable-ssp --disable-libssp
--enable-java-awt=gtk --enable-gtk-cairo --disable-libjava-multilib
--with-slibdir=/lib --with-system-zlib --enable-shared --enable-__cxa_atexit
--enable-libstdcxx-allocator=new --without-system-libunwind --with-cpu=generic
--host=i586-suse-linux
Thread model: posix
gcc version 4.1.0 (SUSE Linux)
configure-ac:3963: $? = 0
configure-ac:3970: gcc -V >&5
gcc: '-V' option must have argument
configure-ac:3973: $? = 1
configure-ac:3976: checking whether we are using the GNU C compiler
configure-ac:4028: result: yes
configure-ac:4032: checking for gcc option to accept ISO C89
configure-ac:4135: result: none needed
configure-ac:4155: checking dependency style of gcc
configure-ac:4246: result: gcc3
configure-ac:4262: checking whether gcc and cc understand -c and -o together
configure-ac:4297: gcc -c conftest.c -o conftest2.o >&5
configure-ac:4300: $? = 0
configure-ac:4306: gcc -c conftest.c -o conftest2.o >&5
configure-ac:4309: $? = 0
configure-ac:4320: cc -c conftest.c >&5
configure-ac:4323: $? = 0
configure-ac:4331: cc -c conftest.c -o conftest2.o >&5
configure-ac:4334: $? = 0
configure-ac:4340: cc -c conftest.c -o conftest2.o >&5
configure-ac:4343: $? = 0
configure-ac:4361: result: yes
configure-ac:4755: checking for mpcc
configure-ac:4785: result: no
configure-ac:4755: checking for mpxlc
configure-ac:4785: result: no
configure-ac:4755: checking for mpicc
configure-ac:4771: found /usr/local/bin/mpicc
configure-ac:4782: result: mpicc
configure-ac:4795: checking whether the mpicc command works out of the box for
MPI
configure-ac:4848: mpicc -o conftest conftest.c >&5
configure-ac:4854: $? = 0
configure-ac:4860: result: yes
configure-ac:4875: trying to find a LAM environment
configure-ac:5078: checking for mpirun
configure-ac:5097: found /usr/local/bin/mpirun
configure-ac:5110: result: /usr/local/bin/mpirun
configure-ac:5120: mpirun binary for LAM not found, if you want to use LAM,
please add it to your PATH
configure-ac:5139: trying to find a MPICH environment
configure-ac:5146: checking whether the mpicc command works without flags
configure-ac:5203: mpicc -o conftest conftest.c -lmpich >&5
/usr/lib/gcc/i586-suse-linux/4.1.0/../../../../i586-suse-linux/bin/ld: cannot
find -lmpich
collect2: ld returned 1 exit status
configure-ac:5209: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| /* end confdefs.h. */
| /* Define MPI_Init to an innocuous variant, in case <limits.h> declares
MPI_Init.
| For example, HP-UX 11i <limits.h> declares gettimeofday. */
| #define MPI_Init innocuous_MPI_Init
|
| /* System header to define __stub macros and hopefully few prototypes,
| which can conflict with char MPI_Init (); below.
| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
| <limits.h> exists even on freestanding compilers. */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef MPI_Init
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char MPI_Init ();
| /* The GNU C library defines this for functions which it implements
| to always fail with ENOSYS. Some functions are actually named
| something starting with __ and the normal name is an alias. */
| #if defined __stub_MPI_Init || defined __stub___MPI_Init
| choke me
| #endif
|
| int
| main ()
| {
| return MPI_Init ();
| ;
| return 0;
| }
configure-ac:5221: result: no
configure-ac:5267: checking whether the mpicc command works with guessed
headers and libraries
configure-ac:5320: mpicc -o conftest -I/opt/mpich/include
-L/opt/mpich/ch-p4/lib conftest.c -lmpich >&5
configure-ac:5326: $? = 0
configure-ac:5332: result: yes
configure-ac:5354: checking for mpirun
configure-ac:5373: found /opt/mpich/ch-p4/bin/mpirun
configure-ac:5386: result: /opt/mpich/ch-p4/bin/mpirun
configure-ac:5406: found a working MPICH environment
configure-ac:8042: checking how to inline functions
configure-ac:8069: mpicc -c -I/opt/mpich/include conftest.c >&5
configure-ac:8075: $? = 0
configure-ac:8096: result: static inline
configure-ac:8125: checking the compiler type
configure-ac:8156: result: gcc
configure-ac:8196: checking whether the compiler accepts -fast
configure-ac:8221: mpicc -c -fast -I/opt/mpich/include conftest.c >&5
cc1: error: unrecognized command line option "-fast"
configure-ac:8227: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| #define MPI "mpich"
| #define MDINLINE static inline
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure-ac:8238: result: no
configure-ac:8251: checking whether the compiler accepts -m64
configure-ac:8276: mpicc -c -m64 -I/opt/mpich/include conftest.c >&5
conftest.c:1: sorry, unimplemented: 64-bit mode not compiled in
configure-ac:8282: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| #define MPI "mpich"
| #define MDINLINE static inline
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure-ac:8293: result: no
configure-ac:8305: checking whether the compiler accepts -march=nocona
configure-ac:8330: mpicc -c -march=nocona -I/opt/mpich/include conftest.c >&5
configure-ac:8336: $? = 0
configure-ac:8341: result: yes
configure-ac:8525: checking whether the compiler accepts -msse2 -mfpmath=sse
configure-ac:8550: mpicc -c -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include conftest.c >&5
configure-ac:8556: $? = 0
configure-ac:8561: result: yes
configure-ac:8579: checking whether the compiler accepts -malign-double
configure-ac:8604: mpicc -c -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include conftest.c >&5
configure-ac:8610: $? = 0
configure-ac:8615: result: yes
configure-ac:8636: checking whether the compiler accepts -O3
configure-ac:8661: mpicc -c -O3 -malign-double -msse2 -mfpmath=sse
-march=nocona -I/opt/mpich/include conftest.c >&5
configure-ac:8667: $? = 0
configure-ac:8672: result: yes
configure-ac:8688: checking whether the compiler accepts -Wno-unused-function
configure-ac:8713: mpicc -c -Wno-unused-function -O3 -malign-double -msse2
-mfpmath=sse -march=nocona -I/opt/mpich/include conftest.c >&5
configure-ac:8719: $? = 0
configure-ac:8724: result: yes
configure-ac:8740: checking whether the compiler accepts -Wall
configure-ac:8765: mpicc -c -Wall -Wno-unused-function -O3 -malign-double
-msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include conftest.c >&5
configure-ac:8771: $? = 0
configure-ac:8776: result: yes
configure-ac:8792: checking whether the compiler accepts -ffast-math
configure-ac:8817: mpicc -c -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:8823: $? = 0
configure-ac:8828: result: yes
configure-ac:8844: checking whether the compiler accepts -floop-optimize
configure-ac:8869: mpicc -c -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include conftest.c >&5
configure-ac:8875: $? = 0
configure-ac:8880: result: yes
configure-ac:8896: checking whether the compiler accepts -funroll-loops
configure-ac:8921: mpicc -c -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include conftest.c >&5
configure-ac:8927: $? = 0
configure-ac:8932: result: yes
configure-ac:9003: checking whether the compiler accepts -fomit-frame-pointer
configure-ac:9028: mpicc -c -fomit-frame-pointer -funroll-loops -floop-optimize
-ffast-math -Wall -Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse
-march=nocona -I/opt/mpich/include conftest.c >&5
configure-ac:9034: $? = 0
configure-ac:9039: result: yes
configure-ac:9165: checking whether the compiler accepts -finline-limit=1000000
configure-ac:9190: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:9196: $? = 0
configure-ac:9201: result: yes
configure-ac:10992: checking for gawk
configure-ac:11019: result: gawk
configure-ac:11030: checking for grep that handles long lines and -e
configure-ac:11104: result: /usr/bin/grep
configure-ac:11109: checking for egrep
configure-ac:11187: result: /usr/bin/grep -E
configure-ac:11235: checking for ranlib
configure-ac:11251: found /usr/bin/ranlib
configure-ac:11262: result: ranlib
configure-ac:11301: checking for a BSD-compatible install
configure-ac:11357: result: /usr/bin/install -c
configure-ac:11368: checking whether ln -s works
configure-ac:11372: result: yes
configure-ac:11381: checking for doxygen
configure-ac:11399: found /usr/bin/doxygen
configure-ac:11412: result: /usr/bin/doxygen
configure-ac:11430: checking for pdflatex
configure-ac:11448: found /usr/bin/pdflatex
configure-ac:11461: result: /usr/bin/pdflatex
configure-ac:11471: checking for makeindex
configure-ac:11489: found /usr/bin/makeindex
configure-ac:11502: result: /usr/bin/makeindex
configure-ac:11512: checking for bibtex
configure-ac:11530: found /usr/bin/bibtex
configure-ac:11543: result: /usr/bin/bibtex
configure-ac:11722: checking for libtcl8.5
configure-ac:11756: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -ltcl8.5 -lmpich >&5
/usr/lib/gcc/i586-suse-linux/4.1.0/../../../../i586-suse-linux/bin/ld: cannot
find -ltcl8.5
collect2: ld returned 1 exit status
configure-ac:11762: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| #define MPI "mpich"
| #define MDINLINE static inline
| #define USE_NON_CONST 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char Tcl_Init ();
| int
| main ()
| {
| return Tcl_Init ();
| ;
| return 0;
| }
configure-ac:11810: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib -L/sw/lib conftest.c -ltcl8.5
-lmpich >&5
/usr/lib/gcc/i586-suse-linux/4.1.0/../../../../i586-suse-linux/bin/ld: cannot
find -ltcl8.5
collect2: ld returned 1 exit status
configure-ac:11816: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| #define MPI "mpich"
| #define MDINLINE static inline
| #define USE_NON_CONST 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char Tcl_Init ();
| int
| main ()
| {
| return Tcl_Init ();
| ;
| return 0;
| }
configure-ac:11810: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib -L/usr/lib64 conftest.c -ltcl8.5
-lmpich >&5
/usr/lib/gcc/i586-suse-linux/4.1.0/../../../../i586-suse-linux/bin/ld: cannot
find -ltcl8.5
collect2: ld returned 1 exit status
configure-ac:11816: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| #define MPI "mpich"
| #define MDINLINE static inline
| #define USE_NON_CONST 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char Tcl_Init ();
| int
| main ()
| {
| return Tcl_Init ();
| ;
| return 0;
| }
configure-ac:11810: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib -L/usr/local/lib64 conftest.c
-ltcl8.5 -lmpich >&5
/usr/lib/gcc/i586-suse-linux/4.1.0/../../../../i586-suse-linux/bin/ld: cannot
find -ltcl8.5
collect2: ld returned 1 exit status
configure-ac:11816: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| #define MPI "mpich"
| #define MDINLINE static inline
| #define USE_NON_CONST 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char Tcl_Init ();
| int
| main ()
| {
| return Tcl_Init ();
| ;
| return 0;
| }
configure-ac:11810: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib -L/opt/lib64 conftest.c -ltcl8.5
-lmpich >&5
/usr/lib/gcc/i586-suse-linux/4.1.0/../../../../i586-suse-linux/bin/ld: cannot
find -ltcl8.5
collect2: ld returned 1 exit status
configure-ac:11816: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| #define MPI "mpich"
| #define MDINLINE static inline
| #define USE_NON_CONST 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char Tcl_Init ();
| int
| main ()
| {
| return Tcl_Init ();
| ;
| return 0;
| }
configure-ac:11810: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib -L/usr/lib conftest.c -ltcl8.5
-lmpich >&5
/usr/lib/gcc/i586-suse-linux/4.1.0/../../../../i586-suse-linux/bin/ld: cannot
find -ltcl8.5
collect2: ld returned 1 exit status
configure-ac:11816: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| #define MPI "mpich"
| #define MDINLINE static inline
| #define USE_NON_CONST 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char Tcl_Init ();
| int
| main ()
| {
| return Tcl_Init ();
| ;
| return 0;
| }
configure-ac:11810: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib -L/usr/local/lib conftest.c
-ltcl8.5 -lmpich >&5
/usr/lib/gcc/i586-suse-linux/4.1.0/../../../../i586-suse-linux/bin/ld: cannot
find -ltcl8.5
collect2: ld returned 1 exit status
configure-ac:11816: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| #define MPI "mpich"
| #define MDINLINE static inline
| #define USE_NON_CONST 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char Tcl_Init ();
| int
| main ()
| {
| return Tcl_Init ();
| ;
| return 0;
| }
configure-ac:11810: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib -L/opt/lib conftest.c -ltcl8.5
-lmpich >&5
/usr/lib/gcc/i586-suse-linux/4.1.0/../../../../i586-suse-linux/bin/ld: cannot
find -ltcl8.5
collect2: ld returned 1 exit status
configure-ac:11816: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| #define MPI "mpich"
| #define MDINLINE static inline
| #define USE_NON_CONST 1
| /* end confdefs.h. */
|
| /* Override any GCC internal prototype to avoid an error.
| Use char because int might match the return type of a GCC
| builtin and then its argument prototype would still apply. */
| #ifdef __cplusplus
| extern "C"
| #endif
| char Tcl_Init ();
| int
| main ()
| {
| return Tcl_Init ();
| ;
| return 0;
| }
configure-ac:11839: result: no
configure-ac:11722: checking for libtcl8.4
configure-ac:11756: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -ltcl8.4 -lmpich >&5
configure-ac:11762: $? = 0
configure-ac:11836: result: yes
configure-ac:12002: checking for tcl.h
configure-ac:12017: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:12023: $? = 0
configure-ac:12076: result: yes
configure-ac:12098: checking for X
configure-ac:12333: result: libraries /usr/X11R6/lib, headers /usr/X11R6/include
configure-ac:13927: checking for libfftw3
configure-ac:13961: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
configure-ac:13967: $? = 0
configure-ac:14041: result: yes
configure-ac:14058: checking for fftw3.h
configure-ac:14073: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:14079: $? = 0
configure-ac:14132: result: yes
configure-ac:15137: checking for ANSI C header files
configure-ac:15167: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15173: $? = 0
configure-ac:15272: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
configure-ac:15275: $? = 0
configure-ac:15281: ./conftest
configure-ac:15284: $? = 0
configure-ac:15301: result: yes
configure-ac:15325: checking for sys/types.h
configure-ac:15346: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15352: $? = 0
configure-ac:15368: result: yes
configure-ac:15325: checking for sys/stat.h
configure-ac:15346: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15352: $? = 0
configure-ac:15368: result: yes
configure-ac:15325: checking for stdlib.h
configure-ac:15346: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15352: $? = 0
configure-ac:15368: result: yes
configure-ac:15325: checking for string.h
configure-ac:15346: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15352: $? = 0
configure-ac:15368: result: yes
configure-ac:15325: checking for memory.h
configure-ac:15346: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15352: $? = 0
configure-ac:15368: result: yes
configure-ac:15325: checking for strings.h
configure-ac:15346: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15352: $? = 0
configure-ac:15368: result: yes
configure-ac:15325: checking for inttypes.h
configure-ac:15346: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15352: $? = 0
configure-ac:15368: result: yes
configure-ac:15325: checking for stdint.h
configure-ac:15346: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15352: $? = 0
configure-ac:15368: result: yes
configure-ac:15325: checking for unistd.h
configure-ac:15346: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15352: $? = 0
configure-ac:15368: result: yes
configure-ac:15411: checking arpa/inet.h usability
configure-ac:15428: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15434: $? = 0
configure-ac:15448: result: yes
configure-ac:15452: checking arpa/inet.h presence
configure-ac:15467: gcc -E -I/opt/mpich/include conftest.c
configure-ac:15473: $? = 0
configure-ac:15487: result: yes
configure-ac:15520: checking for arpa/inet.h
configure-ac:15528: result: yes
configure-ac:15411: checking fcntl.h usability
configure-ac:15428: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15434: $? = 0
configure-ac:15448: result: yes
configure-ac:15452: checking fcntl.h presence
configure-ac:15467: gcc -E -I/opt/mpich/include conftest.c
configure-ac:15473: $? = 0
configure-ac:15487: result: yes
configure-ac:15520: checking for fcntl.h
configure-ac:15528: result: yes
configure-ac:15411: checking float.h usability
configure-ac:15428: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15434: $? = 0
configure-ac:15448: result: yes
configure-ac:15452: checking float.h presence
configure-ac:15467: gcc -E -I/opt/mpich/include conftest.c
configure-ac:15473: $? = 0
configure-ac:15487: result: yes
configure-ac:15520: checking for float.h
configure-ac:15528: result: yes
configure-ac:15401: checking for inttypes.h
configure-ac:15407: result: yes
configure-ac:15411: checking limits.h usability
configure-ac:15428: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15434: $? = 0
configure-ac:15448: result: yes
configure-ac:15452: checking limits.h presence
configure-ac:15467: gcc -E -I/opt/mpich/include conftest.c
configure-ac:15473: $? = 0
configure-ac:15487: result: yes
configure-ac:15520: checking for limits.h
configure-ac:15528: result: yes
configure-ac:15411: checking netdb.h usability
configure-ac:15428: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15434: $? = 0
configure-ac:15448: result: yes
configure-ac:15452: checking netdb.h presence
configure-ac:15467: gcc -E -I/opt/mpich/include conftest.c
configure-ac:15473: $? = 0
configure-ac:15487: result: yes
configure-ac:15520: checking for netdb.h
configure-ac:15528: result: yes
configure-ac:15411: checking netinet/in.h usability
configure-ac:15428: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15434: $? = 0
configure-ac:15448: result: yes
configure-ac:15452: checking netinet/in.h presence
configure-ac:15467: gcc -E -I/opt/mpich/include conftest.c
configure-ac:15473: $? = 0
configure-ac:15487: result: yes
configure-ac:15520: checking for netinet/in.h
configure-ac:15528: result: yes
configure-ac:15411: checking stddef.h usability
configure-ac:15428: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15434: $? = 0
configure-ac:15448: result: yes
configure-ac:15452: checking stddef.h presence
configure-ac:15467: gcc -E -I/opt/mpich/include conftest.c
configure-ac:15473: $? = 0
configure-ac:15487: result: yes
configure-ac:15520: checking for stddef.h
configure-ac:15528: result: yes
configure-ac:15401: checking for stdlib.h
configure-ac:15407: result: yes
configure-ac:15401: checking for string.h
configure-ac:15407: result: yes
configure-ac:15401: checking for strings.h
configure-ac:15407: result: yes
configure-ac:15411: checking sys/file.h usability
configure-ac:15428: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15434: $? = 0
configure-ac:15448: result: yes
configure-ac:15452: checking sys/file.h presence
configure-ac:15467: gcc -E -I/opt/mpich/include conftest.c
configure-ac:15473: $? = 0
configure-ac:15487: result: yes
configure-ac:15520: checking for sys/file.h
configure-ac:15528: result: yes
configure-ac:15411: checking sys/socket.h usability
configure-ac:15428: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15434: $? = 0
configure-ac:15448: result: yes
configure-ac:15452: checking sys/socket.h presence
configure-ac:15467: gcc -E -I/opt/mpich/include conftest.c
configure-ac:15473: $? = 0
configure-ac:15487: result: yes
configure-ac:15520: checking for sys/socket.h
configure-ac:15528: result: yes
configure-ac:15411: checking sys/time.h usability
configure-ac:15428: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15434: $? = 0
configure-ac:15448: result: yes
configure-ac:15452: checking sys/time.h presence
configure-ac:15467: gcc -E -I/opt/mpich/include conftest.c
configure-ac:15473: $? = 0
configure-ac:15487: result: yes
configure-ac:15520: checking for sys/time.h
configure-ac:15528: result: yes
configure-ac:15401: checking for unistd.h
configure-ac:15407: result: yes
configure-ac:15543: checking for an ANSI C-conforming const
configure-ac:15618: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
conftest.c: In function 'main':
conftest.c:68: warning: 't' is used uninitialized in this function
conftest.c:84: warning: 'b' is used uninitialized in this function
conftest.c:90: warning: 'cs[0]' is used uninitialized in this function
configure-ac:15624: $? = 0
configure-ac:15639: result: yes
configure-ac:15649: checking whether time.h and sys/time.h may both be included
configure-ac:15679: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:15685: $? = 0
configure-ac:15700: result: yes
configure-ac:15717: checking for stdlib.h
configure-ac:15723: result: yes
configure-ac:15857: checking for GNU libc compatible malloc
configure-ac:15891: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
configure-ac:15894: $? = 0
configure-ac:15900: ./conftest
configure-ac:15903: $? = 0
configure-ac:15919: result: yes
configure-ac:15947: checking for working memcmp
configure-ac:16000: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
configure-ac:16003: $? = 0
configure-ac:16009: ./conftest
configure-ac:16012: $? = 0
configure-ac:16028: result: yes
configure-ac:16042: checking for stdlib.h
configure-ac:16048: result: yes
configure-ac:16182: checking for GNU libc compatible realloc
configure-ac:16216: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
configure-ac:16219: $? = 0
configure-ac:16225: ./conftest
configure-ac:16228: $? = 0
configure-ac:16244: result: yes
configure-ac:16288: checking sys/select.h usability
configure-ac:16305: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:16311: $? = 0
configure-ac:16325: result: yes
configure-ac:16329: checking sys/select.h presence
configure-ac:16344: gcc -E -I/opt/mpich/include conftest.c
configure-ac:16350: $? = 0
configure-ac:16364: result: yes
configure-ac:16397: checking for sys/select.h
configure-ac:16405: result: yes
configure-ac:16278: checking for sys/socket.h
configure-ac:16284: result: yes
configure-ac:16418: checking types of arguments for select
configure-ac:16456: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:16462: $? = 0
configure-ac:16483: result: int,fd_set *,struct timeval *
configure-ac:16506: checking return type of signal handlers
configure-ac:16534: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
conftest.c: In function 'main':
conftest.c:55: error: void value not ignored as it ought to be
configure-ac:16540: $? = 1
configure-ac: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "ESPResSo"
| #define PACKAGE_TARNAME "espresso"
| #define PACKAGE_VERSION "2.0.3t"
| #define PACKAGE_STRING "ESPResSo 2.0.3t"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "espresso"
| #define VERSION "2.0.3t"
| #define MPI "mpich"
| #define MDINLINE static inline
| #define USE_NON_CONST 1
| #define FFTW 3
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_ARPA_INET_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_LIMITS_H 1
| #define HAVE_NETDB_H 1
| #define HAVE_NETINET_IN_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_FILE_H 1
| #define HAVE_SYS_SOCKET_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_UNISTD_H 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_STDLIB_H 1
| #define HAVE_MALLOC 1
| #define HAVE_STDLIB_H 1
| #define HAVE_REALLOC 1
| #define HAVE_SYS_SELECT_H 1
| #define HAVE_SYS_SOCKET_H 1
| #define SELECT_TYPE_ARG1 int
| #define SELECT_TYPE_ARG234 (fd_set *)
| #define SELECT_TYPE_ARG5 (struct timeval *)
| /* end confdefs.h. */
| #include <sys/types.h>
| #include <signal.h>
|
| int
| main ()
| {
| return *(signal (0, 0)) (0) == 1;
| ;
| return 0;
| }
configure-ac:16555: result: void
configure-ac:16563: checking for size_t
configure-ac:16593: mpicc -c -finline-limit=1000000 -fomit-frame-pointer
-funroll-loops -floop-optimize -ffast-math -Wall -Wno-unused-function -O3
-malign-double -msse2 -mfpmath=sse -march=nocona -I/opt/mpich/include
conftest.c >&5
configure-ac:16599: $? = 0
configure-ac:16614: result: yes
configure-ac:16626: checking for working strtod
configure-ac:16677: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
configure-ac:16680: $? = 0
configure-ac:16686: ./conftest
configure-ac:16689: $? = 0
configure-ac:16705: result: yes
configure-ac:16882: checking for atexit
configure-ac:16938: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
configure-ac:16944: $? = 0
configure-ac:16962: result: yes
configure-ac:16882: checking for floor
configure-ac:16938: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
conftest.c:74: warning: conflicting types for built-in function 'floor'
configure-ac:16944: $? = 0
configure-ac:16962: result: yes
configure-ac:16882: checking for getcwd
configure-ac:16938: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
configure-ac:16944: $? = 0
configure-ac:16962: result: yes
configure-ac:16882: checking for gethostbyname
configure-ac:16938: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
configure-ac:16944: $? = 0
configure-ac:16962: result: yes
configure-ac:16882: checking for memset
configure-ac:16938: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
conftest.c:77: warning: conflicting types for built-in function 'memset'
configure-ac:16944: $? = 0
configure-ac:16962: result: yes
configure-ac:16882: checking for pow
configure-ac:16938: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
conftest.c:78: warning: conflicting types for built-in function 'pow'
configure-ac:16944: $? = 0
configure-ac:16962: result: yes
configure-ac:16882: checking for rint
configure-ac:16938: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
conftest.c:79: warning: conflicting types for built-in function 'rint'
configure-ac:16944: $? = 0
configure-ac:16962: result: yes
configure-ac:16882: checking for select
configure-ac:16938: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
configure-ac:16944: $? = 0
configure-ac:16962: result: yes
configure-ac:16882: checking for socket
configure-ac:16938: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
configure-ac:16944: $? = 0
configure-ac:16962: result: yes
configure-ac:16882: checking for sqrt
configure-ac:16938: mpicc -o conftest -finline-limit=1000000
-fomit-frame-pointer -funroll-loops -floop-optimize -ffast-math -Wall
-Wno-unused-function -O3 -malign-double -msse2 -mfpmath=sse -march=nocona
-I/opt/mpich/include -L/opt/mpich/ch-p4/lib conftest.c -lfftw3 -ltcl8.4
-lmpich -lm >&5
conftest.c:82: warning: conflicting types for built-in function 'sqrt'
configure-ac:16944: $? = 0
configure-ac:16962: result: yes
configure-ac:16987: checking whether to enable the chooser
configure-ac:16990: result: yes
configure-ac:17020: checking the name of the configuration header
configure-ac:17023: result: myconfig.h
configure-ac:17207: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by ESPResSo config.status 2.0.3t, which was
generated by GNU Autoconf 2.61. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on harry
config.status:701: creating Makefile-am
config.status:701: creating scripts/Makefile
config.status:701: creating testsuite/Makefile
config.status:701: creating doc/Makefile
config.status:701: creating doc/ug/Makefile
config.status:701: creating doc/ug/figures/Makefile
config.status:701: creating doc/dg/Makefile
config.status:701: creating config/myconfig.h
config.status:701: creating chooser/Espresso
config.status:701: creating mpiwrap/Espresso
config.status:701: creating testsuite/test.sh
config.status:701: creating Espresso
config.status:701: creating acconfig.h
config.status:969: acconfig.h is unchanged
config.status:1019: linking ../Makefile to Makefile
config.status:1041: executing depfiles commands
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=Pentium_4_64-pc-linux
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_XMKMF_set=
ac_cv_env_XMKMF_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_atexit=yes
ac_cv_func_floor=yes
ac_cv_func_getcwd=yes
ac_cv_func_gethostbyname=yes
ac_cv_func_malloc_0_nonnull=yes
ac_cv_func_memcmp_working=yes
ac_cv_func_memset=yes
ac_cv_func_pow=yes
ac_cv_func_realloc_0_nonnull=yes
ac_cv_func_rint=yes
ac_cv_func_select=yes
ac_cv_func_select_args='int,fd_set *,struct timeval *'
ac_cv_func_socket=yes
ac_cv_func_sqrt=yes
ac_cv_func_strtod=yes
ac_cv_have_x='have_x=yes ac_x_includes='\''/usr/X11R6/include'\''
ac_x_libraries='\''/usr/X11R6/lib'\'''
ac_cv_header_arpa_inet_h=yes
ac_cv_header_fcntl_h=yes
ac_cv_header_float_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_limits_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_netdb_h=yes
ac_cv_header_netinet_in_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stddef_h=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_file_h=yes
ac_cv_header_sys_select_h=yes
ac_cv_header_sys_socket_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_host=Pentium_4_64-pc-linux
ac_cv_objext=o
ac_cv_path_BIBTEX=/usr/bin/bibtex
ac_cv_path_DOXYGEN=/usr/bin/doxygen
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_MAKEINDEX=/usr/bin/makeindex
ac_cv_path_PDFLATEX=/usr/bin/pdflatex
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_lam_bin=/usr/local/bin/mpirun
ac_cv_path_mkdir=/bin/mkdir
ac_cv_path_mpich_bin=/opt/mpich/ch-p4/bin/mpirun
ac_cv_prog_AWK=gawk
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_MPICC=mpicc
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_cc_c89=
ac_cv_prog_cc_gcc_c_o=yes
ac_cv_prog_make_make_set=yes
ac_cv_target=Pentium_4_64-pc-linux
ac_cv_type_signal=void
ac_cv_type_size_t=yes
am_cv_CC_dependencies_compiler_type=gcc3
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /home/tbereau/Espresso/config/missing --run aclocal-1.10'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /home/tbereau/Espresso/config/missing --run tar'
AUTOCONF='${SHELL} /home/tbereau/Espresso/config/missing --run autoconf'
AUTOHEADER='${SHELL} /home/tbereau/Espresso/config/missing --run autoheader'
AUTOMAKE='${SHELL} /home/tbereau/Espresso/config/missing --run automake-1.10'
AWK='gawk'
BIBTEX='/usr/bin/bibtex'
CC='mpicc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-finline-limit=1000000 -fomit-frame-pointer -funroll-loops
-floop-optimize -ffast-math -Wall -Wno-unused-function -O3 -malign-double
-msse2 -mfpmath=sse -march=nocona '
CONFIGURE_DEPENDENCIES='$(top_srcdir)/RELEASE_NOTES'
CPP='gcc -E'
CPPFLAGS=' -I/opt/mpich/include'
CYGPATH_W='echo'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DOXYGEN='/usr/bin/doxygen'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
EXEEXT=''
GREP='/usr/bin/grep'
HAVE_DOXYGEN_FALSE='#'
HAVE_DOXYGEN_TRUE=''
HAVE_LATEX_FALSE='#'
HAVE_LATEX_TRUE=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LDFLAGS=' -L/opt/mpich/ch-p4/lib'
LIBOBJS=''
LIBS='-lfftw3 -ltcl8.4 -lmpich -lm '
LN_S='ln -s'
LTLIBOBJS=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINDEX='/usr/bin/makeindex'
MAKEINFO='${SHELL} /home/tbereau/Espresso/config/missing --run makeinfo'
MPICC='mpicc'
MPI_FAKE_FALSE=''
MPI_FAKE_TRUE='#'
MPI_INVOCATION='/opt/mpich/ch-p4/bin/mpirun -np $NP $ESPRESSO_CALL'
OBJEXT='o'
PACKAGE='espresso'
PACKAGE_BUGREPORT='address@hidden'
PACKAGE_NAME='ESPResSo'
PACKAGE_STRING='ESPResSo 2.0.3t'
PACKAGE_TARNAME='espresso'
PACKAGE_VERSION='2.0.3t'
PATH_SEPARATOR=':'
PDFLATEX='/usr/bin/pdflatex'
POW_LIB=''
RANLIB='ranlib'
SET_MAKE=''
SHELL='/bin/sh'
STRIP=''
USE_CHOOSER_FALSE='#'
USE_CHOOSER_TRUE=''
VERSION='2.0.3t'
XMKMF=''
X_CFLAGS=''
X_EXTRA_LIBS=''
X_LIBS=''
X_PRE_LIBS=''
ac_ct_CC='gcc'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__include='include'
am__isrc=' -I$(srcdir)'
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='Pentium_4_64-pc-linux'
build_alias=''
build_cpu='Pentium_4_64'
build_os='linux'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
dmpi_bin=''
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
execpkglibdir='${pkglibdir}/obj-Pentium_4_64-pc-linux'
generic_bin=''
host='Pentium_4_64-pc-linux'
host_alias=''
host_cpu='Pentium_4_64'
host_os='linux'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='$(SHELL) /home/tbereau/Espresso/config/install-sh'
lam_bin='/usr/local/bin/mpirun'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
mpich_bin='/opt/mpich/ch-p4/bin/mpirun'
myconfig='myconfig.h'
oldincludedir='/usr/include'
pdfdir='${docdir}'
poe_bin=''
prefix='/home/tbereau/Espresso'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
scriptsdir='${pkglibdir}/scripts'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target='Pentium_4_64-pc-linux'
target_alias=''
target_cpu='Pentium_4_64'
target_os='linux'
target_vendor='pc'
## ----------- ##
## confdefs.h. ##
## ----------- ##
#define PACKAGE_NAME "ESPResSo"
#define PACKAGE_TARNAME "espresso"
#define PACKAGE_VERSION "2.0.3t"
#define PACKAGE_STRING "ESPResSo 2.0.3t"
#define PACKAGE_BUGREPORT "address@hidden"
#define PACKAGE "espresso"
#define VERSION "2.0.3t"
#define MPI "mpich"
#define MDINLINE static inline
#define USE_NON_CONST 1
#define FFTW 3
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_ARPA_INET_H 1
#define HAVE_FCNTL_H 1
#define HAVE_FLOAT_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_LIMITS_H 1
#define HAVE_NETDB_H 1
#define HAVE_NETINET_IN_H 1
#define HAVE_STDDEF_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_STRINGS_H 1
#define HAVE_SYS_FILE_H 1
#define HAVE_SYS_SOCKET_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_STDLIB_H 1
#define HAVE_MALLOC 1
#define HAVE_STDLIB_H 1
#define HAVE_REALLOC 1
#define HAVE_SYS_SELECT_H 1
#define HAVE_SYS_SOCKET_H 1
#define SELECT_TYPE_ARG1 int
#define SELECT_TYPE_ARG234 (fd_set *)
#define SELECT_TYPE_ARG5 (struct timeval *)
#define RETSIGTYPE void
#define HAVE_ATEXIT 1
#define HAVE_FLOOR 1
#define HAVE_GETCWD 1
#define HAVE_GETHOSTBYNAME 1
#define HAVE_MEMSET 1
#define HAVE_POW 1
#define HAVE_RINT 1
#define HAVE_SELECT 1
#define HAVE_SOCKET 1
#define HAVE_SQRT 1
#define LAST_CHANGE "August 22nd, 2007"
configure-ac: exit 0