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01/02: gnu: Add bedtools-2.18.
From: |
Ricardo Wurmus |
Subject: |
01/02: gnu: Add bedtools-2.18. |
Date: |
Tue, 12 Jul 2016 10:20:12 +0000 (UTC) |
rekado pushed a commit to branch master
in repository guix.
commit 9a8f309cf1f654b9775caf0ee1bc65ee274d4117
Author: Ricardo Wurmus <address@hidden>
Date: Tue Jul 12 12:19:15 2016 +0200
gnu: Add bedtools-2.18.
* gnu/packages/bioinformatics.scm (bedtools-2.18): New variable.
---
gnu/packages/bioinformatics.scm | 15 +++++++++++++++
1 file changed, 15 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5ab3bcc..355b578 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -258,6 +258,21 @@ intervals from multiple files in widely-used genomic file
formats such as BAM,
BED, GFF/GTF, VCF.")
(license license:gpl2)))
+;; Later releases of bedtools produce files with more columns than
+;; what Ribotaper expects.
+(define-public bedtools-2.18
+ (package (inherit bedtools)
+ (name "bedtools")
+ (version "2.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/arq5x/bedtools2/"
+ "archive/v" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "05vrnr8yp7swfagshzpgqmzk1blnwnq8pq5pckzi1m26w98d63vf"))))))
+
(define-public bioawk
(package
(name "bioawk")