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01/01: gnu: Add r-sva.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: Add r-sva. |
Date: |
Sat, 14 Jan 2017 10:15:37 +0000 (UTC) |
rekado pushed a commit to branch master
in repository guix.
commit dd42a330d1301fd34f36dada9d142006165abaef
Author: Raoul Jean Pierre Bonnal <address@hidden>
Date: Fri Jan 13 20:38:25 2017 +0100
gnu: Add r-sva.
* gnu/packages/bioinformatics.scm (r-sva): New variable.
---
gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d82b6c0..4b9cd22 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7995,3 +7995,29 @@ immunoprecipitation and target enrichment on small gene
panels. Thereby,
CopywriteR constitutes a widely applicable alternative to available copy
number detection tools.")
(license license:gpl2)))
+
+(define-public r-sva
+ (package
+ (name "r-sva")
+ (version "3.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "sva" version))
+ (sha256
+ (base32
+ "1wc1fjm6dzlsqqagm43y57w8jh8nsh0r0m8z1p6ximcb5gxqh7hn"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genefilter" ,r-genefilter)))
+ (home-page "http://bioconductor.org/packages/sva")
+ (synopsis "Surrogate variable analysis")
+ (description
+ "This package contains functions for removing batch effects and other
+unwanted variation in high-throughput experiment. It also contains functions
+for identifying and building surrogate variables for high-dimensional data
+sets. Surrogate variables are covariates constructed directly from
+high-dimensional data like gene expression/RNA sequencing/methylation/brain
+imaging data that can be used in subsequent analyses to adjust for unknown,
+unmodeled, or latent sources of noise.")
+ (license license:artistic2.0)))