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16/17: gnu: Add r-msnbase.
From: |
Ricardo Wurmus |
Subject: |
16/17: gnu: Add r-msnbase. |
Date: |
Tue, 17 Jan 2017 20:47:21 +0000 (UTC) |
rekado pushed a commit to branch master
in repository guix.
commit 11879284cbbcc045029f328b7a20a4af4796cb2c
Author: Ricardo Wurmus <address@hidden>
Date: Mon Jan 16 12:21:21 2017 +0100
gnu: Add r-msnbase.
* gnu/packages/bioinformatics.scm (r-msnbase): New variable.
---
gnu/packages/bioinformatics.scm | 41 +++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bc7b0be..abe5c92 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8422,3 +8422,44 @@ accurate missing value estimation. A set of methods for
printing and plotting
the results is also provided. All PCA methods make use of the same data
structure (pcaRes) to provide a common interface to the PCA results.")
(license license:gpl3+)))
+
+(define-public r-msnbase
+ (package
+ (name "r-msnbase")
+ (version "2.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MSnbase" version))
+ (sha256
+ (base32
+ "0jjjs29dcwsjaxzfqxy98ycpg3rwxzzchkj77my3cjgdc00sm66n"))))
+ (properties `((upstream-name . "MSnbase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-affy" ,r-affy)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-digest" ,r-digest)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-impute" ,r-impute)
+ ("r-iranges" ,r-iranges)
+ ("r-maldiquant" ,r-maldiquant)
+ ("r-mzid" ,r-mzid)
+ ("r-mzr" ,r-mzr)
+ ("r-pcamethods" ,r-pcamethods)
+ ("r-plyr" ,r-plyr)
+ ("r-preprocesscore" ,r-preprocesscore)
+ ("r-protgenerics" ,r-protgenerics)
+ ("r-rcpp" ,r-rcpp)
+ ("r-reshape2" ,r-reshape2)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-vsn" ,r-vsn)
+ ("r-xml" ,r-xml)))
+ (home-page "https://github.com/lgatto/MSnbase")
+ (synopsis "Base functions and classes for MS-based proteomics")
+ (description
+ "This package provides basic plotting, data manipulation and processing
+of MS-based proteomics data.")
+ (license license:artistic2.0)))
- branch master updated (46076d0 -> 66da3a9), Ricardo Wurmus, 2017/01/17
- 02/17: gnu: Add r-fivethirtyeight., Ricardo Wurmus, 2017/01/17
- 08/17: gnu: Add r-maldiquant., Ricardo Wurmus, 2017/01/17
- 05/17: gnu: Add r-compquadform., Ricardo Wurmus, 2017/01/17
- 16/17: gnu: Add r-msnbase.,
Ricardo Wurmus <=
- 14/17: gnu: Add r-mzid., Ricardo Wurmus, 2017/01/17
- 04/17: gnu: Add ribodiff., Ricardo Wurmus, 2017/01/17
- 01/17: gnu: powertabeditor: Update to 2.0.0-alpha9., Ricardo Wurmus, 2017/01/17
- 03/17: gnu: Add hisat2., Ricardo Wurmus, 2017/01/17
- 07/17: gnu: Add r-raremetals2., Ricardo Wurmus, 2017/01/17
- 15/17: gnu: Add r-pcamethods., Ricardo Wurmus, 2017/01/17
- 12/17: gnu: Add r-affy., Ricardo Wurmus, 2017/01/17
- 11/17: gnu: Add r-affyio., Ricardo Wurmus, 2017/01/17
- 10/17: gnu: Add r-mzr., Ricardo Wurmus, 2017/01/17
- 06/17: gnu: Add r-seqminer., Ricardo Wurmus, 2017/01/17