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01/01: gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5.
From: |
Roel Janssen |
Subject: |
01/01: gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5. |
Date: |
Mon, 30 Jan 2017 11:13:41 +0000 (UTC) |
roelj pushed a commit to branch master
in repository guix.
commit aa3eeeb5420524a2ba23b8484534cefe5ab181a9
Author: Roel Janssen <address@hidden>
Date: Mon Jan 30 12:11:04 2017 +0100
gnu: Add r-bsgenome-hsapiens-1000genomes-hs37d5.
* gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
New variable.
---
gnu/packages/bioinformatics.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3bf3521..c605c58 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6885,6 +6885,37 @@ dependencies between GO terms can be implemented and
applied.")
genome data packages and support for efficient SNP representation.")
(license license:artistic2.0)))
+(define-public r-bsgenome-hsapiens-1000genomes-hs37d5
+ (package
+ (name "r-bsgenome-hsapiens-1000genomes-hs37d5")
+ (version "0.99.1")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "http://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "BSgenome.Hsapiens.1000genomes.hs37d5_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"))))
+ (properties
+ `((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5")))
+ (build-system r-build-system)
+ ;; As this package provides little more than a very large data file it
+ ;; doesn't make sense to build substitutes.
+ (arguments `(#:substitutable? #f))
+ (propagated-inputs
+ `(("r-bsgenome" ,r-bsgenome)))
+ (home-page
+
"http://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/")
+ (synopsis "Full genome sequences for Homo sapiens")
+ (description
+ "This package provides full genome sequences for Homo sapiens from
+1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.")
+ (license license:artistic2.0)))
+
(define-public r-impute
(package
(name "r-impute")