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06/06: gnu: sra-tools: Update to 2.8.2-1.
From: |
Ricardo Wurmus |
Subject: |
06/06: gnu: sra-tools: Update to 2.8.2-1. |
Date: |
Thu, 16 Mar 2017 08:47:33 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 79849358f86ca9e49298f3c9f3cf2e964e69ecac
Author: Ricardo Wurmus <address@hidden>
Date: Thu Mar 16 13:40:36 2017 +0100
gnu: sra-tools: Update to 2.8.2-1.
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.8.2-1.
[arguments]: Add DEFAULT_CRT and DEFAULT_KFG to make flags.
---
gnu/packages/bioinformatics.scm | 12 +++++++++---
1 file changed, 9 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 220e352..2a56829 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4738,7 +4738,7 @@ sequence itself can be retrieved from these databases.")
(define-public sra-tools
(package
(name "sra-tools")
- (version "2.7.0")
+ (version "2.8.2-1")
(source
(origin
(method url-fetch)
@@ -4748,13 +4748,19 @@ sequence itself can be retrieved from these databases.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "13paw7bq6y47d2pl0ac5gpgcqp1xsy1g7v1fwysm3hr8lb2dck17"))))
+ "1camsijmvv2s45mb4iyf44ghl4gkd4rl0viphpcgl3ccchy32a0g"))))
(build-system gnu-build-system)
(arguments
`(#:parallel-build? #f ; not supported
#:tests? #f ; no "check" target
#:make-flags
- (list (string-append "VDB_LIBDIR="
+ (list (string-append "DEFAULT_CRT="
+ (assoc-ref %build-inputs "ncbi-vdb")
+ "/kfg/certs.kfg")
+ (string-append "DEFAULT_KFG="
+ (assoc-ref %build-inputs "ncbi-vdb")
+ "/kfg/default.kfg")
+ (string-append "VDB_LIBDIR="
(assoc-ref %build-inputs "ncbi-vdb")
,(if (string-prefix? "x86_64"
(or (%current-target-system)
- branch master updated (0f03c53 -> 7984935), Ricardo Wurmus, 2017/03/16
- 01/06: gnu: ngs-sdk: Update to 1.3.0., Ricardo Wurmus, 2017/03/16
- 04/06: gnu: ncbi-vdb: Override search path for java-ngs., Ricardo Wurmus, 2017/03/16
- 03/06: gnu: ncbi-vdb: Use modify-phases syntax., Ricardo Wurmus, 2017/03/16
- 05/06: gnu: ncbi-vdb: Install configuration files., Ricardo Wurmus, 2017/03/16
- 06/06: gnu: sra-tools: Update to 2.8.2-1.,
Ricardo Wurmus <=
- 02/06: gnu: ncbi-vdb: Update to 2.8.2., Ricardo Wurmus, 2017/03/16