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02/02: gnu: r-minimal: Do not compress serialized files.
From: |
Ricardo Wurmus |
Subject: |
02/02: gnu: r-minimal: Do not compress serialized files. |
Date: |
Tue, 22 Aug 2017 10:24:47 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit bd3a184613e20155a8b3e417f00f4d59ff0935e6
Author: Ricardo Wurmus <address@hidden>
Date: Tue Aug 22 12:59:48 2017 +0200
gnu: r-minimal: Do not compress serialized files.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Replace build phase
"patch-which" with "do-not-compress-serialized-files".
[propagated-inputs]: Move "which" from here...
[inputs]: ...to here.
Fixes <https://bugs.gnu.org/28157>.
---
gnu/packages/statistics.scm | 13 ++++++-------
1 file changed, 6 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 7f6360f..ad3032e 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -126,11 +126,12 @@ be output in text, PostScript, PDF or HTML.")
"PKG_BUILT_STAMP=1970-01-01")
#:phases
(modify-phases %standard-phases
- ;; FIXME: see bug #28157.
- (add-before 'configure 'patch-which
+ (add-before 'configure 'do-not-compress-serialized-files
(lambda* (#:key inputs #:allow-other-keys)
- (substitute* "src/library/base/R/unix/system.unix.R"
- (("@WHICH@") "which"))
+ ;; This ensures that Guix can detect embedded store references;
+ ;; see bug #28157 for details.
+ (substitute* "src/library/base/makebasedb.R"
+ (("compress = TRUE") "compress = FALSE"))
#t))
(add-before 'configure 'patch-uname
(lambda* (#:key inputs #:allow-other-keys)
@@ -250,10 +251,8 @@ be output in text, PostScript, PDF or HTML.")
("libxt" ,libxt)
("pcre" ,pcre)
("readline" ,readline)
+ ("which" ,which)
("zlib" ,zlib)))
- ;; FIXME: By default Sys.which embeds a reference to "which", but this
- ;; reference is not detected by Guix (see bug #28157).
- (propagated-inputs `(("which" ,which)))
(native-search-paths
(list (search-path-specification
(variable "R_LIBS_SITE")