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01/01: gnu: ribotaper: Wrap executables.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: ribotaper: Wrap executables. |
Date: |
Tue, 2 Jan 2018 06:07:12 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 7edee3442722bd4adab44f79b0336af51c0254ef
Author: Ricardo Wurmus <address@hidden>
Date: Tue Jan 2 12:06:00 2018 +0100
gnu: ribotaper: Wrap executables.
* gnu/packages/bioinformatics.scm (ribotaper)[arguments]: Add phase
"wrap-executables".
---
gnu/packages/bioinformatics.scm | 14 ++++++++++++++
1 file changed, 14 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 78eb294..8a48281 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -493,6 +493,20 @@ BED, GFF/GTF, VCF.")
(base32
"0ykjbps1y3z3085q94npw8i9x5gldc6shy8vlc08v76zljsm07hv"))))
(build-system gnu-build-system)
+ (arguments
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-after 'install 'wrap-executables
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ (let* ((out (assoc-ref outputs "out")))
+ (for-each
+ (lambda (script)
+ (wrap-program (string-append out "/bin/" script)
+ `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))))
+ '("create_annotations_files.bash"
+ "create_metaplots.bash"
+ "Ribotaper_ORF_find.sh"
+ "Ribotaper.sh"))))))))
(inputs
`(("bedtools" ,bedtools-2.18)
("samtools" ,samtools-0.1)