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01/112: gnu: r-minimal: Update to 3.5.0.
From: |
Ricardo Wurmus |
Subject: |
01/112: gnu: r-minimal: Update to 3.5.0. |
Date: |
Sat, 2 Jun 2018 07:39:55 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit d22546cf80696719cfb76aec2ffdf44863be3fbc
Author: Ricardo Wurmus <address@hidden>
Date: Fri Jun 1 17:10:48 2018 +0200
gnu: r-minimal: Update to 3.5.0.
* gnu/packages/statistics.scm (r-with-tests): New variable derived from
r-minimal; update to 3.5.0.
[arguments]: Build recommended packages.
(r-minimal): Inherit from r-with-tests.
[arguments]: Disable recommended packages and tests.
---
gnu/packages/statistics.scm | 29 ++++++++++++++++++++---------
1 file changed, 20 insertions(+), 9 deletions(-)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 7d5c552..7a6b674 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -113,10 +113,10 @@ be output in text, PostScript, PDF or HTML.")
;; Update this package together with the set of recommended packages: r-boot,
;; r-class, r-cluster, r-codetools, r-foreign, r-kernsmooth, r-lattice,
;; r-mass, r-matrix, r-mgcv, r-nlme, r-nnet, r-rpart, r-spatial, r-survival.
-(define-public r-minimal
+(define r-with-tests
(package
- (name "r-minimal")
- (version "3.4.4")
+ (name "r-with-tests")
+ (version "3.5.0")
(source (origin
(method url-fetch)
(uri (string-append "mirror://cran/src/base/R-"
@@ -124,7 +124,7 @@ be output in text, PostScript, PDF or HTML.")
version ".tar.gz"))
(sha256
(base32
- "0dq3jsnwsb5j3fhl0wi3p5ycv8avf8s5j1y4ap3d2mkjmcppvsdk"))))
+ "0w38865laqg28cdhikxdxhx4rfp0kgcn72gakwypsy91br9ja5zx"))))
(build-system gnu-build-system)
(arguments
`(#:disallowed-references (,tzdata-for-tests)
@@ -217,11 +217,9 @@ as.POSIXct(if (\"\" != Sys.getenv(\"SOURCE_DATE_EPOCH\"))
{\
(add-after 'build 'install-info
(lambda _ (zero? (system* "make" "install-info")))))
#:configure-flags
- `(;; Do not build the recommended packages. The build system creates
- ;; random temporary directories and embeds their names in some
- ;; package files. We build these packages with the r-build-system
- ;; instead.
- "--without-recommended-packages"
+ `(;; We build the recommended packages here, because they are needed in
+ ;; order to run the test suite. We disable them in the r-minimal
+ ;; package.
"--with-cairo"
"--with-blas=-lopenblas"
"--with-libpng"
@@ -292,6 +290,19 @@ publication-quality data plots. A large amount of
3rd-party packages are
available, greatly increasing its breadth and scope.")
(license license:gpl3+)))
+(define-public r-minimal
+ (package (inherit r-with-tests)
+ (name "r-minimal")
+ (arguments
+ `(#:tests? #f
+ ,@(substitute-keyword-arguments (package-arguments r-with-tests)
+ ((#:configure-flags flags)
+ ;; Do not build the recommended packages. The build system creates
+ ;; random temporary directories and embeds their names in some
+ ;; package files. We build these packages with the r-build-system
+ ;; instead.
+ `(cons "--without-recommended-packages" ,flags)))))))
+
(define-public rmath-standalone
(package (inherit r-minimal)
(name "rmath-standalone")
- branch master updated (d5452aa -> 41f1755), Ricardo Wurmus, 2018/06/02
- 02/112: gnu: r-hpar: Update to 1.22.2., Ricardo Wurmus, 2018/06/02
- 01/112: gnu: r-minimal: Update to 3.5.0.,
Ricardo Wurmus <=
- 05/112: gnu: r-ripseeker: Update to 1.20.0., Ricardo Wurmus, 2018/06/02
- 04/112: gnu: r-diffbind: Update to 2.8.0., Ricardo Wurmus, 2018/06/02
- 07/112: gnu: r-marray: Update to 1.58.0., Ricardo Wurmus, 2018/06/02
- 08/112: gnu: r-cghbase: Update to 1.40.0., Ricardo Wurmus, 2018/06/02
- 06/112: gnu: r-chippeakanno: Update to 3.14.0., Ricardo Wurmus, 2018/06/02
- 11/112: gnu: r-annotate: Update to 1.58.0., Ricardo Wurmus, 2018/06/02
- 12/112: gnu: r-copynumber: Update to 1.20.0., Ricardo Wurmus, 2018/06/02
- 13/112: gnu: r-geneplotter: Update to 1.58.0., Ricardo Wurmus, 2018/06/02
- 15/112: gnu: r-deseq2: Update to 1.20.0., Ricardo Wurmus, 2018/06/02
- 20/112: gnu: r-category: Update to 2.46.0., Ricardo Wurmus, 2018/06/02