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02/02: gnu: python2-scikit-learn: Fix check phase.


From: Ricardo Wurmus
Subject: 02/02: gnu: python2-scikit-learn: Fix check phase.
Date: Thu, 20 Sep 2018 09:57:21 -0400 (EDT)

rekado pushed a commit to branch master
in repository guix.

commit 391fc11f0e492b06fa6eb31535e1e34165040b7d
Author: Ricardo Wurmus <address@hidden>
Date:   Thu Sep 20 15:53:20 2018 +0200

    gnu: python2-scikit-learn: Fix check phase.
    
    * gnu/packages/machine-learning.scm (python2-scikit-learn)[arguments]:
    Override check phase to disable broken tests and pass environment variables.
---
 gnu/packages/machine-learning.scm | 19 ++++++++++++++++++-
 1 file changed, 18 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/machine-learning.scm 
b/gnu/packages/machine-learning.scm
index 9aa61bd..990a6c7 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -750,7 +750,24 @@ data analysis.")
     (license license:bsd-3)))
 
 (define-public python2-scikit-learn
-  (package-with-python2 python-scikit-learn))
+  (let ((parent (package-with-python2 python-scikit-learn)))
+    (package (inherit parent)
+      (arguments
+       (substitute-keyword-arguments (package-arguments parent)
+         ((#:phases phases)
+          `(modify-phases ,phases
+             (replace 'check
+               (lambda _
+                 ;; Restrict OpenBLAS threads to prevent segfaults while 
testing!
+                 (setenv "OPENBLAS_NUM_THREADS" "1")
+                 ;; Some tests expect to be able to write to HOME.
+                 (setenv "HOME" "/tmp")
+                 ;; Disable tests that require network access
+                 (delete-file "sklearn/datasets/tests/test_kddcup99.py")
+                 (delete-file "sklearn/datasets/tests/test_mldata.py")
+                 (delete-file "sklearn/datasets/tests/test_rcv1.py")
+                 (invoke "pytest" "sklearn")
+                 #t)))))))))
 
 (define-public python-autograd
   (let* ((commit "442205dfefe407beffb33550846434baa90c4de7")



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