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03/12: gnu: Add r-pore.
From: |
Ludovic Courtès |
Subject: |
03/12: gnu: Add r-pore. |
Date: |
Fri, 21 Sep 2018 11:04:54 -0400 (EDT) |
civodul pushed a commit to branch master
in repository guix.
commit 7e27393f82ff5e7237f870ded09652b89e457faa
Author: pimi <address@hidden>
Date: Tue Sep 11 16:54:32 2018 +0200
gnu: Add r-pore.
* gnu/packages/bioinformatics.scm (r-pore): New variable.
Signed-off-by: Ludovic Courtès <address@hidden>
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 10330cd..9599e30 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13736,3 +13736,32 @@ juicer) and single-resolution or multi-resolution
@code{.cool} files (for
cooler). Both @code{hic} and @code{cool} files describe Hi-C contact
matrices.")
(license license:expat)))
+
+(define-public r-pore
+ (package
+ (name "r-pore")
+ (version "0.24")
+ (source
+ (origin
+ (method url-fetch)
+ (uri
+ (string-append "mirror://sourceforge/rpore/" version
+ "/poRe_" version ".tar.gz"))
+ (sha256
+ (base32 "0pih9nljbv8g4x8rkk29i7aqq681b782r5s5ynp4nw9yzqnmmksv"))))
+ (properties `((upstream-name . "poRe")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bit64" ,r-bit64)
+ ("r-data-table" ,r-data-table)
+ ("r-rhdf5" ,r-rhdf5)
+ ("r-shiny" ,r-shiny)
+ ("r-svdialogs" ,r-svdialogs)))
+ (home-page "https://sourceforge.net/projects/rpore/")
+ (synopsis "Visualize Nanopore sequencing data")
+ (description
+ "This package provides graphical user interfaces to organize and
visualize Nanopore
+sequencing data.")
+ ;; This is free software but the license variant is unclear:
+ ;; <https://github.com/mw55309/poRe_docs/issues/10>.
+ (license license:bsd-3)))
- branch master updated (10e066f -> 92a9f14), Ludovic Courtès, 2018/09/21
- 02/12: gnu: hdf5-parallel-openmpi: Really enable parallel build., Ludovic Courtès, 2018/09/21
- 03/12: gnu: Add r-pore.,
Ludovic Courtès <=
- 08/12: inferior: Add 'inferior-package->manifest-entry'., Ludovic Courtès, 2018/09/21
- 01/12: gnu: hdf5: Allow for absence of utility script., Ludovic Courtès, 2018/09/21
- 09/12: profiles: 'packages->manifest' now accepts inferior packages., Ludovic Courtès, 2018/09/21
- 06/12: inferior: Add 'inferior-package-inputs' & co., Ludovic Courtès, 2018/09/21
- 07/12: inferior: Add 'inferior-package-search-paths' & co., Ludovic Courtès, 2018/09/21
- 10/12: channels: Add 'channel-instances->derivation'., Ludovic Courtès, 2018/09/21
- 05/12: inferior: Add 'lookup-inferior-packages'., Ludovic Courtès, 2018/09/21
- 11/12: inferior: Add 'inferior-for-channels'., Ludovic Courtès, 2018/09/21
- 04/12: inferior: Add 'inferior-package-derivation'., Ludovic Courtès, 2018/09/21
- 12/12: doc: Add section about inferiors., Ludovic Courtès, 2018/09/21