02/02: gnu: Add r-htscluster.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 3a0babacdcd1f6d3691c777b64d8fd3527eefb42
Author: Ricardo Wurmus <address@hidden>
Date:   Mon Mar 4 15:00:18 2019 +0100

    gnu: Add r-htscluster.
    
    * gnu/packages/bioconductor.scm (r-htscluster): New variable.
---
 gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9057158..ae9d707 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1199,3 +1199,32 @@ sequencing data.")
 algorithm to segment DNA copy number data and identify genomic regions with
 abnormal copy number.")
     (license license:gpl2+)))
+
+;; This is a CRAN package, but it uncharacteristically depends on a
+;; Bioconductor package.
+(define-public r-htscluster
+  (package
+    (name "r-htscluster")
+    (version "2.0.8")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "HTSCluster" version))
+       (sha256
+        (base32
+         "0wnbfh6hdx8692jilgmv8sys1zm6fqc6mim7vvjhyqlmpm8gm0kg"))))
+    (properties `((upstream-name . "HTSCluster")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-capushe" ,r-capushe)
+       ("r-edger" ,r-edger)
+       ("r-plotrix" ,r-plotrix)))
+    (home-page "https://cran.r-project.org/web/packages/HTSCluster";)
+    (synopsis "Clustering high-throughput transcriptome sequencing (HTS) data")
+    (description
+     "This package provides a Poisson mixture model is implemented to cluster
+genes from high-throughput transcriptome sequencing (RNA-seq) data.  Parameter
+estimation is performed using either the EM or CEM algorithm, and the slope
+heuristics are used for model selection (i.e., to choose the number of
+clusters).")
+    (license license:gpl3+)))