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branch staging updated (2b0c755 -> a4de1a6)
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From: |
guix-commits |
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Subject: |
branch staging updated (2b0c755 -> a4de1a6) |
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Date: |
Sun, 10 Mar 2019 13:45:19 -0400 (EDT) |
mbakke pushed a change to branch staging
in repository guix.
from 2b0c755 gnu: gnome-shell: Update to 3.28.2.
adds 8fadbc4 gnu: lcov: Update to 1.14.
adds bde093c gnu: cabextract: Update to 1.9.1.
adds 393b55d gnu: cabextract: Don't use NAME in source URI.
adds d2b38df gnu: font-gnu-unifont: Update to 12.0.01.
adds 6aa896d gnu: Update copyright headers.
adds 3d13b44 gnu: r-copynumber: Move to (gnu packages bioconductor).
adds 9f8698a gnu: Add guile-stis-parser.
adds bfb93b4 gnu: r-geneplotter: Move to (gnu packages bioconductor).
adds 66e35ce gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu
packages bioconductor).
adds 40a6505 gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu
packages bioconductor).
adds fe0b76e gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages
bioconductor).
adds 5acb905 gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages
bioconductor).
adds c3adc83 gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu
packages bioconductor).
adds b7d93cf gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages
bioconductor).
adds 0c792ff gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages
bioconductor).
adds 13dabd6 gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu
packages bioconductor).
adds 7bc5d1b gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu
packages bioconductor).
adds 3a08940 gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor).
adds f8780e9 gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor).
adds d56df35 gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).
adds 8035819 gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor).
adds 61e265d gnu: Add multitime.
adds 11599cf gnu: diffoscope: Update to 113.
adds 307603d gnu: electrum: Update to 3.3.4.
adds 01d8a2a gnu: electron-cash: Update to 3.3.6.
adds d935f69 gnu: yoshimi: Update to 1.5.10.2.
adds 4b159ad gnu: padthv1: Update to 0.9.5.
adds cf61959 gnu: samplv1: Update to 0.9.5.
adds 6ef147b gnu: drumkv1: Update to 0.9.5.
adds fc240e7 gnu: synthv1: Update to 0.9.5.
adds 38e37e7 nls: Add Swedish translation.
adds 7850fa8 gnu: address@hidden: Update to 4.9.162.
adds 1b1a6c0 gnu: address@hidden: Update to 4.14.105.
adds 9870f3e gnu: address@hidden: Update to 4.19.27.
adds 274fa49 gnu: linux-libre: Update to 5.0.
adds a4678c6 database: Make 'register-items' transactional.
adds 2cb658a describe: Add 'package-provenance'.
adds d40ec4a pack: Add '--save-provenance'.
adds abe6e67 gnu: sane-backends-minimal: Fix USB support.
adds 2702aa9 gnu: unibilium: Update to 2.0.0.
adds 0a10abf gnu: neovim: Fix #34616.
adds ccf2446 gnu: minetest: Update to 5.0.0.
adds 9cb4bda gnu: nftables: Update to 0.9.0.
adds 9fd6ad3 gnu: wireguard: Update to 0.0.20190227.
adds 237ee6f gnu: python2-fastlmm: Disable tests.
adds 3b29647 gnu: cd-hit: Support longer sequences.
adds 3189fad gnu: neovim: Let build phase return #T.
adds 1e1142d gnu: Add nullmailer.
adds b60e9fb gnu: fuseiso: Fix typo in description.
adds f6f67b8 system: Add (gnu system accounts).
adds 6061d01 activation: Operate on <user-account> and <user-group>
records.
adds ec600e4 Add (gnu build accounts).
adds 0ae735b activation: Build account databases with (gnu build
accounts).
adds 0ef5430 gnu: c-graph: Update to 2.0.1.
adds c4bfce9 gnu: libmicrohttpd: Update to 0.9.63.
adds dcf4d01 gnu: libmicrohttpd: Enable parallel tests.
adds 945723b gnu: php: Update to 7.3.3.
adds d748cb5 gnu: Add autorandr.
adds 3f22a11 gnu: Add r-ellipsis.
adds dab3e92 gnu: Add r-magick.
adds f0bff69 gnu: Add r-survey.
adds 6e8b38d gnu: Add r-furrr.
adds d1c2fd8 gnu: r-future-apply: Update to 1.2.0.
adds fadc49c gnu: r-vegan: Update to 2.5-4.
adds 75cbc80 gnu: r-network: Update to 1.14-377.
adds 83ef38b gnu: r-epi: Update to 2.35.
adds d235cf7 gnu: r-shiny: Update to 1.2.0.
adds aeb11b7 gnu: r-ggthemes: Update to 4.1.0.
adds e51096b gnu: r-vgam: Update to 1.1-1.
adds b58220f gnu: r-pbapply: Update to 1.4-0.
adds 84840de gnu: r-purrr: Update to 0.3.1.
adds ebd37b4 gnu: r-tidyr: Update to 0.8.3.
adds ed4100d gnu: r-mvtnorm: Update to 1.0-10.
adds 21886e7 gnu: r-r-rsp: Update to 0.43.1.
adds 3db71d0 gnu: r-r-utils: Update to 2.8.0.
adds b22a204 gnu: r-registry: Update to 0.5-1.
adds 6be62a5 gnu: r-irlba: Update to 2.3.3.
adds bc7895e gnu: r-flexmix: Update to 2.3-15.
adds 4fadef3 gnu: r-xml: Update to 3.98-1.19.
adds a1d9387 gnu: r-catools: Update to 1.17.1.2.
adds 9066534 gnu: r-openssl: Update to 1.2.2.
adds 17abcd5 gnu: r-ranger: Update to 0.11.2.
adds 605fcf8 gnu: r-stringr: Update to 1.4.0.
adds 71fe7f9 gnu: r-stringi: Update to 1.3.1.
adds 48a4b77 gnu: r-mgcv: Update to 1.8-27.
adds 1f7a76a gnu: r-evaluate: Update to 0.13.
adds 4b16c00 gnu: r-formatr: Update to 1.6.
adds 6a0a234 gnu: r-r6: Update to 2.4.0.
adds 34a98f7 gnu: r-forcats: Update to 0.4.0.
adds 6caf80f gnu: r-lme4: Update to 1.1-21.
adds ed494a0 gnu: r-dplyr: Update to 0.8.0.1.
adds f59cdea gnu: r-igraph: Update to 1.2.4.
adds 7706a98 gnu: r-huge: Update to 1.3.0.
adds 8a05d17 gnu: r-gmp: Update to 0.5-13.4.
adds 4bc5d45 gnu: r-bigrquery: Update to 1.1.0.
adds 0b14b10 gnu: r-tidytree: Update to 0.2.4.
adds 91f0b74 gnu: r-ks: Update to 1.11.4.
adds f18ca07 gnu: r-lmertest: Update to 3.1-0.
adds e2fee46 gnu: r-afex: Update to 0.23-0.
adds e0f8616 gnu: r-emmeans: Update to 1.3.3.
adds b1f39e8 gnu: r-multcomp: Update to 1.4-10.
adds 5093cbd gnu: r-summarytools: Update to 0.9.2.
adds a6a87db gnu: r-dvmisc: Update to 1.1.3.
adds a431c38 gnu: r-hash: Update to 2.2.6.1.
adds 1007b1b gnu: r-slam: Update to 0.1-45.
adds 3d5bcae gnu: r-abjutils: Update to 0.2.3.
adds 7754557 gnu: r-prediction: Update to 0.3.6.2.
adds fd1a17a gnu: r-officer: Update to 0.3.3.
adds d3f22f0 gnu: r-reticulate: Update to 1.11.1.
adds bbe9421 gnu: r-maptools: Update to 0.9-5.
adds f5ce1dc gnu: r-zip: Update to 2.0.0.
adds ea010aa gnu: r-arules: Update to 1.6-3.
adds b9b1041 gnu: r-fnn: Update to 1.1.3.
adds 8b2c80b gnu: r-vim: Update to 4.8.0.
adds 00fb320 gnu: r-later: Update to 0.8.0.
adds cb40b6e gnu: r-radiant-data: Update to 0.9.9.
adds d8787b3 gnu: r-ifultools: Update to 2.0-5.
adds 87bb1b8 gnu: r-metap: Update to 1.1.
adds 22777c8 gnu: r-xfun: Update to 0.5.
adds d2cd541 gnu: r-mice: Update to 3.4.0.
adds 532b359 gnu: r-jomo: Update to 2.6-7.
adds 6e4a9b8 gnu: r-ggsignif: Update to 0.5.0.
adds 2170a36 gnu: r-gower: Update to 0.2.0.
adds 937e155 gnu: r-rmysql: Update to 0.10.17.
adds 59c5134 gnu: r-emdbook: Update to 1.3.11.
adds bef7824 gnu: r-haven: Update to 2.1.0.
adds e190d9a gnu: r-proxy: Update to 0.4-23.
adds e89d542 gnu: r-flextable: Update to 0.5.1.
adds 790db51 gnu: r-servr: Update to 0.13.
adds f544ab3 gnu: r-sys: Update to 3.0.
adds 8f37f53 gnu: r-readxl: Update to 1.3.0.
adds 20662a3 gnu: r-ggmap: Update to 3.0.0.
adds d623462 etc: snippets: Prefill package name and version.
adds 933dad9 gnu: Add mruby.
adds 9580394 etc: snippets: Prefill package name.
adds 2fa1a3a gnu: dovecot: Don't use NAME in source URI.
adds 13b1fb5 gnu: dovecot: Update to 2.3.5.
adds 792d3ed gnu: man-pages: Update to 5.00.
adds 8972989 gnu: r-dexseq: Update to 1.28.2.
adds fff11bc gnu: r-genomeinfodb: Update to 1.18.2.
adds cd43ae3 gnu: r-variantannotation: Update to 1.28.11.
adds 58209b1 gnu: r-biocparallel: Update to 1.16.6.
adds 57f40dc gnu: r-rsamtools: Update to 1.34.1.
adds d493043 gnu: r-rtracklayer: Update to 1.42.2.
adds d86b9ec gnu: r-genomicfeatures: Update to 1.34.4.
adds 53e7f02 gnu: r-rhtslib: Update to 1.14.1.
adds d371323 gnu: r-annotationhub: Update to 2.14.4.
adds 101dcc2 gnu: r-ensembldb: Update to 2.6.7.
adds 6453d7a gnu: r-gviz: Update to 1.26.5.
adds 183b657 gnu: r-mzr: Update to 2.16.2.
adds daeb3cd gnu: r-genelendatabase: Update to 1.18.0.
adds 75f0bda gnu: flatpak: Add more dependencies.
adds fb0aeaa gnu: u-boot: Remove openssl input.
adds 910aaa3 doc: Document references.
adds 4035fcb channels: Do not fail when the inferior lacks 'guix repl'.
adds fc7d6bc gnu: crawl: Build with python3-wrapper.
adds b892844 gnu: crawl: Don't assume system architecture.
adds 606c198 gnu: crawl: Find all the included headers.
adds eb6ef89 gnu: fc-host-tools: Update to 10.
adds a734da8 gnu: Add rkrlv2.
adds 847768b gnu: Add translate2geda.
adds cafd4d3 gnu: Add texlive-latex-xmpincl.
adds f87dcb4 gnu: Add texlive-latex-pdfx.
adds 8b6acb1 gnu: blast+: Update to 2.7.1.
adds 8057c9e gnu: Add epl2.0.
adds 74c2339 gnu: Add java-eclipse-jdt-compiler-apt.
adds d429878 activation: Shared system home directories are now 555
and root-owned.
adds 0bd1498 upstream: Correctly report failure to update Git
checkouts.
adds a48db08 gnu: i3lock-fancy: Don't use unstable tarball.
adds f45cc96 gnu: i3lock-color: Don't use unstable tarball.
adds 7969751 gnu: i3lock-color: Update to 2.12.c.
adds f762e49 gnu: dovecot: Indent arguments.
adds 37fc44e gnu: dovecot: Avoid unnecessary patching.
adds 7b957a3 gnu: youtube-viewer: Update to "3.5.4.
adds 373abfb gnu: lynis: Update to 2.7.2.
adds 9835506 gnu: Add hyperledger-fabric.
adds 7d4cab7 gnu: Add openfst.
adds 2b613a1 gnu: hyperledger-fabric: Fix description, set supported
system and parallel build.
adds 380384e gnu: ibus: Update Unicode data to 12.0.0.
adds 4eb57ca gnu: Add opensmtpd-next.
adds 05487ed gnu: scons: Update to 3.0.4.
adds c06709b gnu: Add slingshot.
adds 8ada024 gnu: Add 4dtris.
adds d7764d4 gnu: Add libsmpeg-with-sdl1.
adds ca32afa gnu: Add btanks.
adds 10bd288 gnu: sane-backends: Support PNG scanimage output.
adds 6845ab5 gnu: Import (gnu packages image) in (gnu packages
scanner).
adds f1fff66 gnu: elogind: Update to 239.4.
adds 755226e gnu: python-dask: Update to 1.1.4.
adds 511930c gnu: libmspack: Update to 0.10.1.
adds 2c0cf9e gnu: xapian: Update to 1.4.11.
adds df8dbfb gnu: notmuch: Update to 0.28.3.
adds 06e3ed5 gnu: xprop: Update to 1.2.4.
adds 41ce925 gnu: xfd: Update to 1.1.3.
new 8c5533b Merge branch 'master' into staging
new 1c47246 gnu: libuninameslist: Update to 20190305.
new 792737e gnu: subversion: Update to 1.10.4 [fixes CVE-2018-11803].
new 55f80e1 gnu: libvdpau: Update to 1.2.
new a4de1a6 gnu: double-conversion: Update to 3.1.3.
The 5 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.dir-locals.el | 1 +
Makefile.am | 11 +-
doc/guix.texi | 34 +-
.../text-mode/guix-commit-message-add-package | 7 +-
.../text-mode/guix-commit-message-update-package | 19 +-
gnu/build/accounts.scm | 561 +++++++
gnu/build/activation.scm | 274 +---
gnu/build/install.scm | 3 +-
gnu/local.mk | 4 +-
gnu/packages/admin.scm | 5 +-
.../linux-libre/{4.20-arm.conf => 5.0-arm.conf} | 296 ++--
.../{4.20-arm64.conf => 5.0-arm64.conf} | 418 ++++--
.../linux-libre/{4.20-i686.conf => 5.0-i686.conf} | 342 +++--
.../{4.20-x86_64.conf => 5.0-x86_64.conf} | 330 +++--
gnu/packages/benchmark.scm | 27 +-
gnu/packages/bioconductor.scm | 450 +++++-
gnu/packages/bioinformatics.scm | 501 +------
gnu/packages/bootloaders.scm | 8 +-
gnu/packages/code.scm | 6 +-
gnu/packages/compression.scm | 10 +-
gnu/packages/cran.scm | 365 +++--
gnu/packages/embedded.scm | 6 +-
gnu/packages/engineering.scm | 47 +
gnu/packages/finance.scm | 8 +-
gnu/packages/fonts.scm | 6 +-
gnu/packages/fontutils.scm | 4 +-
gnu/packages/freedesktop.scm | 4 +-
gnu/packages/games.scm | 183 ++-
gnu/packages/gnunet.scm | 16 +-
gnu/packages/graph.scm | 6 +-
gnu/packages/guile-xyz.scm | 40 +
gnu/packages/hyperledger.scm | 93 ++
gnu/packages/ibus.scm | 10 +-
gnu/packages/java.scm | 27 +
gnu/packages/linux.scm | 36 +-
gnu/packages/machine-learning.scm | 23 +-
gnu/packages/mail.scm | 210 ++-
gnu/packages/man.scm | 25 +-
gnu/packages/maths.scm | 17 +-
gnu/packages/music.scm | 50 +-
gnu/packages/package-management.scm | 8 +-
gnu/packages/patches/blast+-fix-makefile.patch | 15 -
gnu/packages/php.scm | 11 +-
gnu/packages/python-xyz.scm | 11 +-
gnu/packages/ruby.scm | 61 +
gnu/packages/scanner.scm | 28 +-
gnu/packages/search.scm | 6 +-
gnu/packages/statistics.scm | 125 +-
gnu/packages/terminals.scm | 7 +-
gnu/packages/tex.scm | 74 +
gnu/packages/version-control.scm | 4 +-
gnu/packages/video.scm | 34 +-
gnu/packages/vim.scm | 7 +
gnu/packages/vpn.scm | 8 +-
gnu/packages/wm.scm | 33 +-
gnu/packages/xdisorg.scm | 57 +-
gnu/packages/xorg.scm | 8 +-
gnu/services/dbus.scm | 8 +-
gnu/system/accounts.scm | 109 ++
gnu/system/shadow.scm | 96 +-
gnu/tests/base.scm | 6 +
guix/channels.scm | 6 +
guix/describe.scm | 43 +-
guix/inferior.scm | 27 +-
guix/licenses.scm | 6 +
guix/scripts/pack.scm | 27 +-
guix/scripts/package.scm | 36 +-
guix/store/database.scm | 52 +-
guix/upstream.scm | 53 +-
po/guix/LINGUAS | 1 +
po/guix/{da.po => sv.po} | 1540 +++++++-------------
tests/accounts.scm | 309 ++++
72 files changed, 4550 insertions(+), 2749 deletions(-)
create mode 100644 gnu/build/accounts.scm
rename gnu/packages/aux-files/linux-libre/{4.20-arm.conf => 5.0-arm.conf} (98%)
rename gnu/packages/aux-files/linux-libre/{4.20-arm64.conf => 5.0-arm64.conf}
(97%)
rename gnu/packages/aux-files/linux-libre/{4.20-i686.conf => 5.0-i686.conf}
(99%)
rename gnu/packages/aux-files/linux-libre/{4.20-x86_64.conf =>
5.0-x86_64.conf} (99%)
create mode 100644 gnu/packages/hyperledger.scm
delete mode 100644 gnu/packages/patches/blast+-fix-makefile.patch
create mode 100644 gnu/system/accounts.scm
copy po/guix/{da.po => sv.po} (62%)
create mode 100644 tests/accounts.scm
- branch staging updated (2b0c755 -> a4de1a6),
guix-commits <=
- 05/05: gnu: double-conversion: Update to 3.1.3., guix-commits, 2019/03/10
- 01/05: Merge branch 'master' into staging, guix-commits, 2019/03/10
- 02/05: gnu: libuninameslist: Update to 20190305., guix-commits, 2019/03/10
- 03/05: gnu: subversion: Update to 1.10.4 [fixes CVE-2018-11803]., guix-commits, 2019/03/10
- 04/05: gnu: libvdpau: Update to 1.2., guix-commits, 2019/03/10