02/04: gnu: Add r-fdb-infiniummethylation-hg19.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 0f5c9cec502e0b4c8b4a8aa5b9c42474920c3e03
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Mar 13 13:35:18 2019 +0100

    gnu: Add r-fdb-infiniummethylation-hg19.
    
    * gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New 
variable.
---
 gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 79eab6b..39eb705 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -650,6 +650,38 @@ the TxDb object of Mouse data as provided by UCSC (mm10, 
December 2011)
 based on the knownGene track.")
     (license license:artistic2.0)))
 
+(define-public r-fdb-infiniummethylation-hg19
+  (package
+    (name "r-fdb-infiniummethylation-hg19")
+    (version "2.2.0")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "https://www.bioconductor.org/packages/";
+                                  "release/data/annotation/src/contrib/"
+                                  "FDb.InfiniumMethylation.hg19_"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"))))
+    (properties
+     `((upstream-name . "FDb.InfiniumMethylation.hg19")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biostrings" ,r-biostrings)
+       ("r-genomicfeatures" ,r-genomicfeatures)
+       ("r-annotationdbi" ,r-annotationdbi)
+       ("r-org-hs-eg-db" ,r-org-hs-eg-db)
+       ("r-txdb-hsapiens-ucsc-hg19-knowngene" 
,r-txdb-hsapiens-ucsc-hg19-knowngene)))
+    (home-page 
"https://bioconductor.org/packages/FDb.InfiniumMethylation.hg19/";)
+    (synopsis "Compiled HumanMethylation27 and HumanMethylation450 
annotations")
+    (description
+     "This is an annotation package for Illumina Infinium DNA methylation
+probes.  It contains the compiled HumanMethylation27 and HumanMethylation450
+annotations.")
+    (license license:artistic2.0)))
+
 
 ;;; Experiment data