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[PATCH] Add r-graph to fix r-topgo.
From: |
Ricardo Wurmus |
Subject: |
[PATCH] Add r-graph to fix r-topgo. |
Date: |
Wed, 17 Feb 2016 11:30:12 +0100 |
>From c58ff030a4733db2a3ded8100a185a316ad68a22 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <address@hidden>
Date: Wed, 13 Jan 2016 16:26:13 +0100
Subject: [PATCH 1/2] gnu: Add r-graph.
* gnu/packages/bioinformatics.scm (r-graph): New variable.
---
gnu/packages/bioinformatics.scm | 19 +++++++++++++++++++
1 file changed, 19 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fa208c8..40a38eb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4162,6 +4162,25 @@ extracting the desired features in a convenient format.")
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
+(define-public r-graph
+ (package
+ (name "r-graph")
+ (version "1.48.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "graph" version))
+ (sha256
+ (base32
+ "16w75rji3kv24gfv44w66y1a2y75ax26rl470y3ypna0ndc3rrcd"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)))
+ (home-page "http://bioconductor.org/packages/graph")
+ (synopsis "Handle graph data structures in R")
+ (description
+ "This package implements some simple graph handling capabilities for R.")
+ (license license:artistic2.0)))
+
(define-public r-topgo
(package
(name "r-topgo")
--
2.1.0
>From a7e2c7e04f1521368dfa12ba39b8064e64c6c2a9 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <address@hidden>
Date: Wed, 13 Jan 2016 16:26:37 +0100
Subject: [PATCH 2/2] gnu: r-topgo: Add missing input.
* gnu/packages/bioinformatics.scm (r-topgo)[propagated-inputs]: Add
"r-graph".
---
gnu/packages/bioinformatics.scm | 1 +
1 file changed, 1 insertion(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 40a38eb..9b5bd12 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4199,6 +4199,7 @@ information about the latest version of the Gene
Ontologies.")
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-go-db" ,r-go-db)
+ ("r-graph" ,r-graph)
("r-sparsem" ,r-sparsem)))
(home-page "http://bioconductor.org/packages/topGO")
(synopsis "Enrichment analysis for gene ontology")
--
2.1.0
- [PATCH] Add r-graph to fix r-topgo.,
Ricardo Wurmus <=