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[PATCH] gnu: Add libBigWig.
From: |
Ricardo Wurmus |
Subject: |
[PATCH] gnu: Add libBigWig. |
Date: |
Wed, 24 Feb 2016 17:21:47 +0100 |
Hi Guix,
the description is a little short. Basically, this is a cleaner
reimplementation of a popular tool/library that is released under a
non-commercial license. There is little more I can say about it and the
original description just references that other tool.
Any ideas how to improve this?
~~ Ricardo
>From d315b3857072fdb0f2f322eaa7562d0bf0c92017 Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <address@hidden>
Date: Wed, 24 Feb 2016 17:17:53 +0100
Subject: [PATCH] gnu: Add libBigWig.
* gnu/packages/bioinformatics.scm (libbigwig): New variable.
---
gnu/packages/bioinformatics.scm | 45 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 45 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 623eeb6..16cda70 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -40,6 +40,7 @@
#:use-module (gnu packages boost)
#:use-module (gnu packages compression)
#:use-module (gnu packages cpio)
+ #:use-module (gnu packages curl)
#:use-module (gnu packages file)
#:use-module (gnu packages gawk)
#:use-module (gnu packages gcc)
@@ -1081,6 +1082,50 @@ preparation protocols.")
other types of unwanted sequence from high-throughput sequencing reads.")
(license license:expat)))
+(define-public libbigwig
+ (package
+ (name "libbigwig")
+ (version "0.1.4")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/dpryan79/libBigWig/"
+ "archive/" version ".tar.gz"))
+ (file-name (string-append name "-" version ".tar.gz"))
+ (sha256
+ (base32
+ "098rjh35pi4a9q83n8wiwvyzykjqj6l8q189p1xgfw4ghywdlvw1"))))
+ (build-system gnu-build-system)
+ (arguments
+ `(#:test-target "test"
+ #:make-flags
+ (list "CC=gcc"
+ (string-append "prefix=" (assoc-ref %outputs "out")))
+ #:phases
+ (modify-phases %standard-phases
+ (delete 'configure)
+ (add-before 'check 'disable-curl-test
+ (lambda _
+ (substitute* "Makefile"
+ (("./test/testRemote.*") ""))
+ #t))
+ (add-before 'install 'create-target-dirs
+ (lambda* (#:key outputs #:allow-other-keys)
+ (let ((out (assoc-ref outputs "out")))
+ (mkdir-p (string-append out "/lib"))
+ (mkdir-p (string-append out "/include"))
+ #t))))))
+ (inputs
+ `(("zlib" ,zlib)
+ ("curl" ,curl)))
+ (native-inputs
+ `(("doxygen" ,doxygen)))
+ (home-page "https://github.com/dpryan79/libBigWig")
+ (synopsis "C library for handling bigWig files")
+ (description
+ "This package provides a C library for parsing local and remote BigWig
+files.")
+ (license license:expat)))
+
(define-public deeptools
(package
(name "deeptools")
--
2.1.0
- [PATCH] gnu: Add libBigWig.,
Ricardo Wurmus <=