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[PATCH 18/18] gnu: Add r-gkmsvm.
From: |
Ricardo Wurmus |
Subject: |
[PATCH 18/18] gnu: Add r-gkmsvm. |
Date: |
Thu, 24 Nov 2016 17:51:39 +0100 |
* gnu/packages/bioinformatics.scm (r-gkmsvm): New variable.
---
gnu/packages/bioinformatics.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 89a9db1..844bb8e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7551,6 +7551,39 @@ bound and non bound genomic regions to accurately
identify transcription
factors bound at the specific regions.")
(license license:gpl2+)))
+(define-public r-gkmsvm
+ (package
+ (name "r-gkmsvm")
+ (version "0.71.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "gkmSVM" version))
+ (sha256
+ (base32
+ "1zpxgxmf2nd5j5wn00ps6kfxr8wxh7d1swr1rr4spq7sj5z5z0k0"))))
+ (properties `((upstream-name . "gkmSVM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-kernlab" ,r-kernlab)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rocr" ,r-rocr)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-seqinr" ,r-seqinr)))
+ (home-page "http://cran.r-project.org/web/packages/gkmSVM")
+ (synopsis "Gapped-kmer support vector machine")
+ (description
+ "This R package provides tools for training gapped-kmer SVM classifiers
+for DNA and protein sequences. This package supports several sequence
+kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
+ (license license:gpl2+)))
+
(define-public emboss
(package
(name "emboss")
--
2.10.2
- [PATCH 12/18] gnu: Add r-gtools., (continued)
- [PATCH 12/18] gnu: Add r-gtools., Ricardo Wurmus, 2016/11/24
- [PATCH 13/18] gnu: Add r-chipkernels., Ricardo Wurmus, 2016/11/24
- [PATCH 14/18] gnu: Add r-seqgl., Ricardo Wurmus, 2016/11/24
- [PATCH 15/18] gnu: Add r-gdata., Ricardo Wurmus, 2016/11/24
- [PATCH 16/18] gnu: Add r-gplots., Ricardo Wurmus, 2016/11/24
- [PATCH 17/18] gnu: Add r-rocr., Ricardo Wurmus, 2016/11/24
- [PATCH 18/18] gnu: Add r-gkmsvm.,
Ricardo Wurmus <=