[PATCH] gnu: Add kallisto.

Hi,

I think I need your help to identify the right license for this package, I set bsd-3 only for convenience this is the original license (https://github.com/pachterlab/kallisto/blob/master/license.txt)

Do I need to use something like :

(license (license:non-copyleft "file://src/COPYING"
                                   "See src/COPYING in the distribution."))))

* gnu/packages/bioinformatics.scm (kallisto): New variable.

---

gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++

1 file changed, 28 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm

index c60bedc..86026fd 100644

--- a/gnu/packages/bioinformatics.scm

+++ b/gnu/packages/bioinformatics.scm

@@ -8502,3 +8502,31 @@ a specified false discovery rate. It also contains a number of utilities to

explore the MS/MS results and assess missed and irregular enzymatic cleavages,

mass measurement accuracy, etc.")

(license license:artistic2.0)))

+(define-public kallisto

+ (package

+ (name "kallisto")

+ (version "0.43.0")

+ (source (origin

+ (method url-fetch)

+ (uri (string-append

+ version ".tar.gz"))

+ (file-name (string-append name "-" version ".tar.gz"))

+ (sha256

+ (base32

+ "1d9cqf3lz6mm9kmqn47d99c6byn6q9l4ppgcafxrhcnrb2davhv9"))))

+ (build-system cmake-build-system)

+ (arguments

+ '(#:tests? #f)) ; no "check" target

+ (inputs

+ `(("zlib" ,zlib)

+ ("hdf5" ,hdf5)))

+ (synopsis "Near-optimal RNA-Seq quantification")

+ (description

+ "Kallisto is a program for quantifying abundances of transcripts from

+RNA-Seq data, or more generally of target sequences using high-throughput

+sequencing reads. It is based on the novel idea of pseudoalignment for rapidly

+determining the compatibility of reads with targets, without the need for alignment.")

+ (license license:bsd-3)))

1.9.1