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bug#27175: [PATCH 5/6] gnu: Add imp.
From: |
Ricardo Wurmus |
Subject: |
bug#27175: [PATCH 5/6] gnu: Add imp. |
Date: |
Wed, 31 May 2017 23:16:10 +0200 |
* gnu/packages/bioinformatics.scm (imp): New variable.
---
gnu/packages/bioinformatics.scm | 48 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 48 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 55770dea2..fa5c32a54 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -85,6 +85,7 @@
#:use-module (gnu packages ruby)
#:use-module (gnu packages serialization)
#:use-module (gnu packages statistics)
+ #:use-module (gnu packages swig)
#:use-module (gnu packages tbb)
#:use-module (gnu packages tex)
#:use-module (gnu packages texinfo)
@@ -9388,3 +9389,50 @@ exon-skipping scanner detection scheme.")
(description "PHYLIP (the PHYLogeny Inference Package) is a package of
programs for inferring phylogenies (evolutionary trees).")
(license license:bsd-2)))
+
+(define-public imp
+ (package
+ (name "imp")
+ (version "2.6.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://integrativemodeling.org/"
+ version "/download/imp-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0lxqx7vh79d771svr611dkilp6sn30qrbw8zvscbrm37v38d2j6h"))))
+ (build-system cmake-build-system)
+ (arguments
+ `(;; FIXME: Some tests fail because they produce warnings, others fail
+ ;; because the PYTHONPATH does not include the modeller's directory.
+ #:tests? #f
+ ;; Do not place libraries in an architecture-specific directory.
+ #:configure-flags
+ (list "-DCMAKE_INSTALL_LIBDIR=lib")))
+ (inputs
+ `(("boost" ,boost)
+ ("gsl" ,gsl)
+ ("swig" ,swig)
+ ("hdf5" ,hdf5)
+ ("fftw" ,fftw)
+ ("python" ,python-2)))
+ (propagated-inputs
+ `(("python2-numpy" ,python2-numpy)
+ ("python2-scipy" ,python2-scipy)
+ ("python2-pandas" ,python2-pandas)
+ ("python2-scikit-learn" ,python2-scikit-learn)
+ ("python2-networkx" ,python2-networkx)))
+ (home-page "https://integrativemodeling.org")
+ (synopsis "Integrative modeling platform")
+ (description "IMP's broad goal is to contribute to a comprehensive
+structural characterization of biomolecules ranging in size and complexity
+from small peptides to large macromolecular assemblies, by integrating data
+from diverse biochemical and biophysical experiments. IMP provides a C++ and
+Python toolbox for solving complex modeling problems, and a number of
+applications for tackling some common problems in a user-friendly way.")
+ ;; IMP is largely available under the GNU Lesser GPL; see the file
+ ;; COPYING.LGPL for the full text of this license. Some IMP modules are
+ ;; available under the GNU GPL (see the file COPYING.GPL).
+ (license (list license:lgpl2.1+
+ license:gpl3+))))
--
2.12.2