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[bug#32642] [PATCH 12/16] gnu: Add python-pypairix.
From: |
Ricardo Wurmus |
Subject: |
[bug#32642] [PATCH 12/16] gnu: Add python-pypairix. |
Date: |
Wed, 5 Sep 2018 16:00:02 +0200 |
* gnu/packages/bioinformatics.scm (python-pypairix): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 963715b43..466e40242 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13579,3 +13579,27 @@ range envelopment. This library was designed to allow
tagging text and time
intervals, where the intervals include the lower bound but not the upper
bound.")
(license license:asl2.0)))
+
+(define-public python-pypairix
+ (package
+ (name "python-pypairix")
+ (version "0.3.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pypairix" version))
+ (sha256
+ (base32
+ "0zs92b74s5v4xy2h16s15f3z6l4nnbw8x8zyif7xx5xpafjn0xss"))))
+ (build-system python-build-system)
+ ;; FIXME: the tests fail because test.support cannot be loaded:
+ ;; ImportError: cannot import name 'support'
+ (arguments '(#:tests? #f))
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "https://github.com/4dn-dcic/pairix")
+ (synopsis "Support for querying pairix-indexed bgzipped text files")
+ (description
+ "Pypairix is a Python module for fast querying on a pairix-indexed
+bgzipped text file that contains a pair of genomic coordinates per line.")
+ (license license:expat)))
--
2.18.0
- [bug#32642] [PATCH 08/16] gnu: Add python-blosc., (continued)
- [bug#32642] [PATCH 08/16] gnu: Add python-blosc., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 07/16] gnu: Add python-locket., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 09/16] gnu: Add python-partd., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 10/16] gnu: Add python-dask., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 14/16] gnu: Add python-cooler., Ricardo Wurmus, 2018/09/05
[bug#32642] [PATCH 11/16] gnu: Add python-intervaltree., Ricardo Wurmus, 2018/09/05
[bug#32642] [PATCH 13/16] gnu: Add python-pyfaidx., Ricardo Wurmus, 2018/09/05
[bug#32642] [PATCH 12/16] gnu: Add python-pypairix.,
Ricardo Wurmus <=