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Re: leasqrdemo

From: Petr Šimon
Subject: Re: leasqrdemo
Date: Fri, 29 Sep 2006 17:56:46 +0800
User-agent: Mutt/1.5.13 (2006-08-11)

thank you very much. I'll try both methods and see what looks better. I
am finally getting some idea what I am up to :)
Thanks a lot

+++ Michael Creel [29/09/06 11:36 +0200]:
From: Michael Creel <address@hidden>
Date: Fri, 29 Sep 2006 11:36:54 +0200
Cc: address@hidden
Subject: Re: leasqrdemo

Przemek Klosowski wrote:
   I am trying to fit function b*(x^a), but I don't know much about fitting
   and I also have problems with derivatives.
   I am using leasqrdemo.m, where I defined

   p = [-1,10];
   function y = leasqrfunc(x,p)
           y = p(2)*(x^p(1))

   but I don't know what the leasqrdfdp should look like.
   function y = leasqrdfdp(x,f,p,dp,func)
           y = [?,?]

You don't need to define the derivatives---if you don't they are
calculated numerically. leasqr() is a wonderful facility, but it like
a race car: temperamental and demanding.  Still, with little care, it
is a pleasure to drive. Here's a simple example:

    x=1:10; y=[12,5,3,2,1,1,1,1,1,1]; p = [-1,10];
    function y = leasqrfunc(x,p)
       y = p(2)*(x.^p(1))


results in a reasonable fit:    pout = [ -1.2841; 12.0054 ]

Note that I changed your function slightly by using the 'scalar'
exponentiation .^ rather than matrix exponentiation, just so that
I can use the function leasqrfunc() on a vector of values, e.g.:


Here's my list of issues with leasqr():

- it seems to be unnecessarily picky about its input arguments: x,y apparently must be column vectors, as leasqr(x,y,p,"leasqrfunc")
   returns an error.

 - I can't seem to get it to run quietly: it produces output even
   with a semicolon at the end of the command line.

 - the help text is exhaustive but not beginner-friendly; leasqrdemo()
   didn't help me either

I think that leasqr() is an important Octave facility, and I would be
glad to do some work on it. Is there someone else who likes it too, to
discuss what needs done and how? I haven't used leasqr() that much, so
maybe I am missing something.

leasqr implements a specific method of finding nonlinear least squares estimates. There are alternatives, for example, using BFGS to do the minimization. You just need to define a function that calculates the sum of squared errors rather than the fitted values. Code for the above example is

function y = leasqrfunc(x,p)
        y = p(2)*(x.^p(1));

function obj_value = obj(p, y, x);
        fit = leasqrfunc(x,p);
        e = y - fit;
        obj_value = sumsq(e)/rows(e);

# plain NLS fit using bfgsmin
p = zeros(2,1);
p = bfgsmin('obj', {p, y, x});

The output is
octave:1> example
p =


ans = 0.57346

so the same result is obtained. The bfgsmin routine will let you use all zeros as start values. The reason leasqr was not running quietly is that there was a missing semicolon in the leasqrfunc().

Cheers, M.

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Petr Šimon
He who binds to himself a joy
Does the winged life destroy;
But he who kisses the joy as it flies
Lives in eternity's sun rise.
                        William Blake

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