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RE: help with compiling octave-3.3.51


From: Charles Yee
Subject: RE: help with compiling octave-3.3.51
Date: Wed, 30 Jun 2010 01:43:18 +0000


I am using lapack-3.0-37.el5.x86_64 and blas-3.0-37.el5.x86_64 for CentOS 5.4.

I can run octave-3.2.4 because I had compiled it with --without-blas and --without-lapack options.

Unfortunately, there seems to be no way of disabling blas and lapack in compiling octave-3.3.51.

Thanks.


-charles

> Date: Tue, 29 Jun 2010 18:24:15 -0500
> Subject: Re: help with compiling octave-3.3.51
> From: address@hidden
> To: address@hidden
> CC: address@hidden; address@hidden
>
> On Tue, Jun 29, 2010 at 5:59 PM, Charles Yee <address@hidden> wrote:
> >
> > I have 2 versions of octave on my machine.
> > I have version 3.2.4 and 3.3.51
> >
> > The following is run ldd command on version 3.2.4
> > ldd /usr/local/bin/octave
> >         liboctinterp.so => /usr/local/lib/octave-3.2.4/liboctinterp.so
> > (0x00002b45a7509000)
> >         liboctave.so => /usr/local/lib/octave-3.2.4/liboctave.so
> > (0x00002b45a84f0000)
> >         libcruft.so => /usr/local/lib/octave-3.2.4/libcruft.so
> > (0x00002b45a928e000)
> >         libGL.so.1 => /usr/lib64/libGL.so.1 (0x000000359ae00000)
> >         libGLU.so.1 => /usr/lib64/libGLU.so.1 (0x0000003596000000)
> >         libX11.so.6 => /usr/lib64/libX11.so.6 (0x0000003593000000)
> >         libreadline.so.5 => /usr/lib64/libreadline.so.5 (0x0000003591000000)
> >         libncurses.so.5 => /usr/lib64/libncurses.so.5 (0x00000035a4200000)
> >         libdl.so.2 => /lib64/libdl.so.2 (0x0000003592000000)
> >         libfreetype.so.6 => /usr/lib64/libfreetype.so.6 (0x0000003593c00000)
> >         libgfortran.so.1 => /usr/lib64/libgfortran.so.1 (0x00002b45a9867000)
> >         libm.so.6 => /lib64/libm.so.6 (0x0000003591c00000)
> >         libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x0000003597c00000)
> >         libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003597000000)
> >         libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003592400000)
> >         libc.so.6 => /lib64/libc.so.6 (0x0000003591800000)
> >         libpcre.so.0 => /lib64/libpcre.so.0 (0x000000359e600000)
> >         libXext.so.6 => /usr/lib64/libXext.so.6 (0x0000003593800000)
> >         libXxf86vm.so.1 => /usr/lib64/libXxf86vm.so.1 (0x00000035a6200000)
> >         libdrm.so.2 => /usr/lib64/libdrm.so.2 (0x000000359ba00000)
> >         libXau.so.6 => /usr/lib64/libXau.so.6 (0x0000003593400000)
> >         libXdmcp.so.6 => /usr/lib64/libXdmcp.so.6 (0x0000003592c00000)
> >         /lib64/ld-linux-x86-64.so.2 (0x0000003590800000)
> >
> >
> > This is the output from ldd command on version 3.3.51:
> >  ldd /usr/local/octave/3.3.51/bin/octave
> >         liblapack.so.3 => /usr/lib64/liblapack.so.3 (0x00002ba65a191000)
> >         libblas.so.3 => /usr/lib64/libblas.so.3 (0x00002ba65a89a000)
> >         liboctinterp-3.3.51.so =>
> > /usr/local/octave/3.3.51/lib/octave-3.3.51/liboctinterp-3.3.51.so
> > (0x00002ba65aaee000)
> >         liboctave-3.3.51.so =>
> > /usr/local/octave/3.3.51/lib/octave-3.3.51/liboctave-3.3.51.so
> > (0x00002ba65bafe000)
> >         libcruft-3.3.51.so =>
> > /usr/local/octave/3.3.51/lib/octave-3.3.51/libcruft-3.3.51.so
> > (0x00002ba65ca96000)
> >         libfreetype.so.6 => /usr/lib64/libfreetype.so.6 (0x0000003593c00000)
> >         libfontconfig.so.1 => /usr/lib64/libfontconfig.so.1
> > (0x0000003594800000)
> >         libGL.so.1 => /usr/lib64/libGL.so.1 (0x000000359ae00000)
> >         libGLU.so.1 => /usr/lib64/libGLU.so.1 (0x0000003596000000)
> >         libX11.so.6 => /usr/lib64/libX11.so.6 (0x0000003593000000)
> >         libreadline.so.5 => /usr/lib64/libreadline.so.5 (0x0000003591000000)
> >         libncurses.so.5 => /usr/lib64/libncurses.so.5 (0x00000035a4200000)
> >         libpcre.so.0 => /lib64/libpcre.so.0 (0x000000359e600000)
> >         libdl.so.2 => /lib64/libdl.so.2 (0x0000003592000000)
> >         libgfortran.so.1 => /usr/lib64/libgfortran.so.1 (0x00002ba65cd34000)
> >         libm.so.6 => /lib64/libm.so.6 (0x0000003591c00000)
> >         libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003592400000)
> >         libc.so.6 => /lib64/libc.so.6 (0x0000003591800000)
> >         libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x0000003597c00000)
> >         libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003597000000)
> >         libexpat.so.0 => /lib64/libexpat.so.0 (0x0000003594000000)
> >         libXext.so.6 => /usr/lib64/libXext.so.6 (0x0000003593800000)
> >         libXxf86vm.so.1 => /usr/lib64/libXxf86vm.so.1 (0x00000035a6200000)
> >         libdrm.so.2 => /usr/lib64/libdrm.so.2 (0x000000359ba00000)
> >         libXau.so.6 => /usr/lib64/libXau.so.6 (0x0000003593400000)
> >         libXdmcp.so.6 => /usr/lib64/libXdmcp.so.6 (0x0000003592c00000)
> >         /lib64/ld-linux-x86-64.so.2 (0x0000003590800000)
> >
> >
> >
> > For version 3.3.51, run-octave gave me the segmentation fault.
> >
> > Running "make check", I got the following error:
> >   make[2]: Leaving directory `/root/temp/octave-3.3.51/scripts'
> >   Making check in examples
> >   make[2]: Entering directory `/root/temp/octave-3.3.51/examples'
> >   make[2]: Nothing to be done for `check'.
> >   make[2]: Leaving directory `/root/temp/octave-3.3.51/examples'
> >   Making check in test
> >   make[2]: Entering directory `/root/temp/octave-3.3.51/test'
> >   ./build_sparse_tests.sh
> >   ./build_bc_overload_tests.sh ./bc_overloads_expected
> >   ../run-octave --norc --silent --no-history ./fntests.m .
> >   make[2]: *** [check] Segmentation fault
> >   make[2]: Leaving directory `/root/temp/octave-3.3.51/test'
> >   make[1]: *** [check-recursive] Error 1
> >   make[1]: Leaving directory `/root/temp/octave-3.3.51'
> >   make: *** [check] Error 2
> >
> >
> > Thanks for your help.
> >
> > -charles
> >
>
> At this moment I could only guess that you may have bad blas/lapack
> library. There were a problem in RHEL5 with lapack
> (see https://bugzilla.redhat.com/show_bug.cgi?id=557977 )
> make sure you have an updated version.
>
> Dmitri.
> --


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