Re: Octave install fail

[Ben Abbott]

On Aug 19, 2013, at 5:52 PM, Riedel, Joseph E (392L) wrote:

> Hi, 
> 
> Can someone comment on this error (after about 4 hours of processing on a mac 
> book pro):
> 
> Thanks for any advice/comments!
> 
> Ed
> 
> dhcp-78-16-217:~/A_Work/Octave2] jer% sudo port clean atlas
> --->  Cleaning atlas
> [dhcp-78-16-217:~/A_Work/Octave2] jer% sudo port install octave-devel 
> +atlas+docs +nofortran
> --->  Computing dependencies for octave-devel
> --->  Dependencies to be installed: SuiteSparse atlas arpack openmpi gcc47 
> cctools cctools-headers cloog gmp isl gcc_select libgcc libmpc mpfr ppl glpk 
> bison m4 curl curl-ca-bundle libidn epstool ghostscript autoconf automake 
> fontconfig jbig2dec libpaper pkgconfig xorg-libXext fop xmlto coreutils 
> docbook-xml docbook-xml-4.1.2 docbook-xml-4.2 xmlcatmgr docbook-xml-4.3 
> docbook-xml-4.4 docbook-xml-4.5 docbook-xml-5.0 docbook-xsl findutils getopt 
> libxslt xorg-libX11 xorg-bigreqsproto xorg-sgml-doctools xorg-inputproto 
> xorg-kbproto xorg-libXau xorg-xproto xorg-libXdmcp xorg-libxcb doxygen flex 
> graphviz gd2 xpm xorg-libXt xorg-libsm xorg-libice xorg-xtrans gts glib2 
> netpbm jbigkit libLASi pango Xft2 xrender xorg-renderproto cairo libpixman 
> lzo2 xorg-xcb-util gobject-introspection harfbuzz graphite2 urw-fonts webp 
> xorg-libXaw groff psutils texinfo xorg-libXmu texlive texlive-basic 
> texlive-bin harfbuzz-icu icu libzzip poppler gtk-doc gnome-doc-utils 
> iso-codes py27-libxml2 rarian openjpeg15 poppler-data t1lib texlive-common 
> texlive-bin-extra detex dvipng latexdiff p5.12-algorithm-diff latexmk 
> texlive-latex pdfjam texlive-latex-recommended pgf texlive-context 
> texlive-fonts-recommended texlive-math-extra texlive-metapost texlive-xetex 
> texlive-generic-recommended texlive-fontutils lcdf-typetools ps2eps t1utils 
> texlive-lang-czechslovak texlive-lang-english texlive-lang-european 
> texlive-lang-french texlive-lang-german texlive-lang-italian 
> texlive-lang-polish texlive-lang-portuguese texlive-lang-spanish 
> texlive-luatex texlive-plain-extra texlive-latex-extra texlive-pictures 
> xorg-libpthread-stubs xorg-xcb-proto xorg-xcmiscproto xorg-xextproto 
> xorg-xf86bigfontproto xorg-util-macros fftw-3 fftw-3-single gawk readline 
> gnuplot aquaterm lua pdflib gperf grep pcre gsed hdf5-18 less pstoedit 
> ImageMagick plotutils qhull qrupdate transfig
> --->  Fetching distfiles for atlas
> --->  Verifying checksums for atlas
> --->  Extracting atlas
> --->  Applying patches to atlas
> --->  Configuring atlas
> Selected C compiler: /opt/local/bin/clang-mp-3.3
> --->  Building atlas
> --->  Staging atlas into destroot
> --->  Installing atlas @3.10.1_5+mpclang33+nofortran
> --->  Activating atlas @3.10.1_5+mpclang33+nofortran
> --->  Cleaning atlas
> --->  Fetching archive for SuiteSparse
> --->  Attempting to fetch SuiteSparse-4.1.0_0+atlas.darwin_11.x86_64.tbz2 
> from http://packages.macports.org/SuiteSparse
> --->  Attempting to fetch SuiteSparse-4.1.0_0+atlas.darwin_11.x86_64.tbz2 
> from http://lil.fr.packages.macports.org/SuiteSparse
> --->  Attempting to fetch SuiteSparse-4.1.0_0+atlas.darwin_11.x86_64.tbz2 
> from 
> http://mse.uk.packages.macports.org/sites/packages.macports.org/SuiteSparse
> --->  Fetching distfiles for SuiteSparse
> --->  Attempting to fetch SuiteSparse-4.1.0.tar.gz from 
> http://distfiles.macports.org/SuiteSparse
> --->  Verifying checksums for SuiteSparse
> --->  Extracting SuiteSparse
> --->  Applying patches to SuiteSparse
> --->  Configuring SuiteSparse
> --->  Building SuiteSparse
> --->  Staging SuiteSparse into destroot
> Error: org.macports.destroot for port SuiteSparse returned: command execution 
> failed
> Error: Failed to install SuiteSparse
> Please see the log file for port SuiteSparse for details:
>     
> /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_SuiteSparse/SuiteSparse/main.log
> Error: The following dependencies were not installed: SuiteSparse arpack 
> openmpi gcc47 cctools cctools-headers cloog gmp isl gcc_select libgcc libmpc 
> mpfr ppl glpk bison m4 curl curl-ca-bundle libidn epstool ghostscript 
> autoconf automake fontconfig jbig2dec libpaper pkgconfig xorg-libXext fop 
> xmlto coreutils docbook-xml docbook-xml-4.1.2 docbook-xml-4.2 xmlcatmgr 
> docbook-xml-4.3 docbook-xml-4.4 docbook-xml-4.5 docbook-xml-5.0 docbook-xsl 
> findutils getopt libxslt xorg-libX11 xorg-bigreqsproto xorg-sgml-doctools 
> xorg-inputproto xorg-kbproto xorg-libXau xorg-xproto xorg-libXdmcp 
> xorg-libxcb doxygen flex graphviz gd2 xpm xorg-libXt xorg-libsm xorg-libice 
> xorg-xtrans gts glib2 netpbm jbigkit libLASi pango Xft2 xrender 
> xorg-renderproto cairo libpixman lzo2 xorg-xcb-util gobject-introspection 
> harfbuzz graphite2 urw-fonts webp xorg-libXaw groff psutils texinfo 
> xorg-libXmu texlive texlive-basic texlive-bin harfbuzz-icu icu libzzip 
> poppler gtk-doc gnome-doc-utils iso-codes py27-libxml2 rarian openjpeg15 
> poppler-data  t1lib texlive-common texlive-bin-extra detex dvipng latexdiff 
> p5.12-algorithm-diff latexmk texlive-latex pdfjam texlive-latex-recommended 
> pgf texlive-context texlive-fonts-recommended texlive-math-extra 
> texlive-metapost texlive-xetex texlive-generic-recommended texlive-fontutils 
> lcdf-typetools ps2eps t1utils texlive-lang-czechslovak texlive-lang-english 
> texlive-lang-european texlive-lang-french texlive-lang-german 
> texlive-lang-italian texlive-lang-polish texlive-lang-portuguese 
> texlive-lang-spanish texlive-luatex texlive-plain-extra texlive-latex-extra 
> texlive-pictures xorg-libpthread-stubs xorg-xcb-proto xorg-xcmiscproto 
> xorg-xextproto xorg-xf86bigfontproto xorg-util-macros fftw-3 fftw-3-single 
> gawk readline gnuplot aquaterm lua pdflib gperf grep pcre gsed hdf5-18 less 
> pstoedit ImageMagick plotutils qhull qrupdate transfig
> To report a bug, follow the instructions in the guide:
>     http://guide.macports.org/#project.tickets
> Error: Processing of port octave-devel failed
> [dhcp-78-16-217:~/A_Work/Octave2] jer% 

As Alex pointed out, this is really a macports issue.  However, my guess is 
that "+nofortran" is the problem ... i.e. you need a fortran compiler to build 
suitesparse.

Ben