[Octave-bug-tracker] [bug #43948] Installing the geometry package fails or causes a crash

[Colin Foster]

URL:
  <http://savannah.gnu.org/bugs/?43948>

                 Summary: Installing the geometry package fails or causes a
crash
                 Project: GNU Octave
            Submitted by: cfoster
            Submitted on: Tue 06 Jan 2015 06:56:35 PM CST
                Category: Octave Forge Package
                Severity: 3 - Normal
                Priority: 5 - Normal
              Item Group: Installation Failure
                  Status: None
             Assigned to: None
         Originator Name: Colin Foster
        Originator Email: 
             Open/Closed: Open
         Discussion Lock: Any
                 Release: 3.8.1
        Operating System: GNU/Linux

    _______________________________________________________

Details:

I apologize for the "or" in the title, but I see two different results when I
try to install the geometry package from forge vs locally.

The first:

GNU Octave, version 3.8.1
Copyright (C) 2014 John W. Eaton and others.
This is free software; see the source code for copying conditions.
There is ABSOLUTELY NO WARRANTY; not even for MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE.  For details, type 'warranty'.

Octave was configured for "x86_64-pc-linux-gnu".

Additional information about Octave is available at http://www.octave.org.

Please contribute if you find this software useful.
For more information, visit http://www.octave.org/get-involved.html

Read http://www.octave.org/bugs.html to learn how to submit bug reports.
For information about changes from previous versions, type 'news'.

octave:1> pkg install -forge -verbose geometry
mkdir (/tmp/oct-ck6rHb)
untar (/home/colin/octave/geometry-1.7.0.tar.gz, /tmp/oct-ck6rHb)
make: Entering directory '/tmp/oct-ck6rHb/geometry/src'
# -i - ignore errors
make[1]: Entering directory '/tmp/oct-ck6rHb/geometry/src/octclip'
/usr/bin/mkoctfile -Wall -Wextra -I. -c calctopo.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c compilador.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c dpeucker.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c errores.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c eucli.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c fgeneral.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c geocnan.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c geocomp.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c greiner.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c polig.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c polil.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c ptopol.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c recpolil.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c segmento.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c ventorno.c
/usr/bin/mkoctfile _oc_polybool.cc calctopo.o compilador.o dpeucker.o
errores.o eucli.o fgeneral.o geocnan.o geocomp.o greiner.o polig.o polil.o
ptopol.o recpolil.o segmento.o ventorno.o -Wall -Wextra -v  -I. 
g++ -c -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-3.8.1/octave/..
-I/usr/include/octave-3.8.1/octave -I/usr/include/mpi  -g -O2
-fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security
-pthread -fopenmp  -Wall -Wextra  -I.  _oc_polybool.cc -o _oc_polybool.o
g++ -shared -Wl,-Bsymbolic  -Wall -Wextra -o _oc_polybool.oct  calctopo.o
compilador.o dpeucker.o errores.o eucli.o fgeneral.o geocnan.o geocomp.o
greiner.o polig.o polil.o ptopol.o recpolil.o segmento.o ventorno.o
_oc_polybool.o   -L/usr/lib/x86_64-linux-gnu/octave/3.8.1
-L/usr/lib/x86_64-linux-gnu -loctinterp -loctave -Wl,-Bsymbolic-functions
-Wl,-z,relro  
cp _oc_polybool.oct ..
rm fgeneral.o eucli.o polig.o geocomp.o polil.o compilador.o greiner.o
geocnan.o dpeucker.o segmento.o errores.o calctopo.o recpolil.o ventorno.o
ptopol.o
make[1]: Leaving directory '/tmp/oct-ck6rHb/geometry/src/octclip'
make: Leaving directory '/tmp/oct-ck6rHb/geometry/src'
copyfile /tmp/oct-ck6rHb/geometry/src/_oc_polybool.oct
/tmp/oct-ck6rHb/geometry/inst/x86_64-pc-linux-gnu-api-v49+
warning: addpath: //home/colin/octave/geom2d: No such file or directory
warning: addpath: //home/colin/octave/io: No such file or directory
warning: addpath: //home/colin/octave/polygons2d: No such file or directory
warning: addpath: //home/colin/octave/shape2d: No such file or directory
warning: addpath: //home/colin/octave/octclip: No such file or directory
warning: addpath: //home/colin/octave/graphs: No such file or directory
warning: addpath: //home/colin/octave/geom3d: No such file or directory
warning: addpath: //home/colin/octave/meshes3d: No such file or directory
warning: addpath: //home/colin/octave/polynomialCurves2d: No such file or
directory
warning: addpath: //home/colin/octave/geom2d: No such file or directory
warning: addpath: //home/colin/octave/io: No such file or directory
warning: addpath: //home/colin/octave/polygons2d: No such file or directory
warning: addpath: //home/colin/octave/shape2d: No such file or directory
warning: addpath: //home/colin/octave/octclip: No such file or directory
warning: addpath: //home/colin/octave/graphs: No such file or directory
warning: addpath: //home/colin/octave/geom3d: No such file or directory
warning: addpath: //home/colin/octave/meshes3d: No such file or directory
warning: addpath: //home/colin/octave/polynomialCurves2d: No such file or
directory
/home/colin/octave/geometry-1.7.0/x86_64-pc-linux-gnu-api-v49+/_oc_polybool.oct:
failed to load:
/home/colin/octave/geometry-1.7.0/x86_64-pc-linux-gnu-api-v49+/_oc_polybool.oct:
undefined symbol: GOMP_critical_start
error: called from 'doc_cache_create>create_cache' in file
/usr/share/octave/3.8.1/m/help/doc_cache_create.m near line 101, column 18
error: called from:
error:   /usr/share/octave/3.8.1/m/pkg/private/install.m at line 248, column
5
error:   /usr/share/octave/3.8.1/m/pkg/pkg.m at line 394, column 9



Or, when I tried to manually download the package, worse things happened:




octave:4> pkg install -verbose /home/colin/Downloads/geometry-1.7.0.tar.gz
warning: load_path:
/home/colin/octave/geometry-1.7.0/x86_64-pc-linux-gnu-api-v49+: No such file
or directory
mkdir (/tmp/oct-efzNmJ)
untar (/home/colin/Downloads/geometry-1.7.0.tar.gz, /tmp/oct-efzNmJ)
warning: load_path:
/home/colin/octave/geometry-1.7.0/x86_64-pc-linux-gnu-api-v49+: No such file
or directory
warning: load_path:
/home/colin/octave/geometry-1.7.0/x86_64-pc-linux-gnu-api-v49+: No such file
or directory
warning: load_path:
/home/colin/octave/geometry-1.7.0/x86_64-pc-linux-gnu-api-v49+: No such file
or directory
warning: load_path:
/home/colin/octave/geometry-1.7.0/x86_64-pc-linux-gnu-api-v49+: No such file
or directory
make: Entering directory '/tmp/oct-efzNmJ/geometry/src'
# -i - ignore errors
make[1]: Entering directory '/tmp/oct-efzNmJ/geometry/src/octclip'
/usr/bin/mkoctfile -Wall -Wextra -I. -c calctopo.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c compilador.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c dpeucker.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c errores.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c eucli.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c fgeneral.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c geocnan.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c geocomp.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c greiner.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c polig.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c polil.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c ptopol.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c recpolil.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c segmento.c
/usr/bin/mkoctfile -Wall -Wextra -I. -c ventorno.c
/usr/bin/mkoctfile _oc_polybool.cc calctopo.o compilador.o dpeucker.o
errores.o eucli.o fgeneral.o geocnan.o geocomp.o greiner.o polig.o polil.o
ptopol.o recpolil.o segmento.o ventorno.o -Wall -Wextra -v  -I. 
g++ -c -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/octave-3.8.1/octave/..
-I/usr/include/octave-3.8.1/octave -I/usr/include/mpi  -g -O2
-fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security
-pthread -fopenmp  -Wall -Wextra  -I.  _oc_polybool.cc -o _oc_polybool.o
g++ -shared -Wl,-Bsymbolic  -Wall -Wextra -o _oc_polybool.oct  calctopo.o
compilador.o dpeucker.o errores.o eucli.o fgeneral.o geocnan.o geocomp.o
greiner.o polig.o polil.o ptopol.o recpolil.o segmento.o ventorno.o
_oc_polybool.o   -L/usr/lib/x86_64-linux-gnu/octave/3.8.1
-L/usr/lib/x86_64-linux-gnu -loctinterp -loctave -Wl,-Bsymbolic-functions
-Wl,-z,relro  
cp _oc_polybool.oct ..
rm fgeneral.o eucli.o polig.o geocomp.o polil.o compilador.o greiner.o
geocnan.o dpeucker.o segmento.o errores.o calctopo.o recpolil.o ventorno.o
ptopol.o
make[1]: Leaving directory '/tmp/oct-efzNmJ/geometry/src/octclip'
make: Leaving directory '/tmp/oct-efzNmJ/geometry/src'
warning: load_path:
/home/colin/octave/geometry-1.7.0/x86_64-pc-linux-gnu-api-v49+: No such file
or directory
copyfile /tmp/oct-efzNmJ/geometry/src/_oc_polybool.oct
/tmp/oct-efzNmJ/geometry/inst/x86_64-pc-linux-gnu-api-v49+
panic: Segmentation fault -- stopping myself...
Segmentation fault (core dumped)


I'm running Ubuntu 14.10




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