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RE: parallel to gunzip and merge .gz files


From: Cook, Malcolm
Subject: RE: parallel to gunzip and merge .gz files
Date: Wed, 9 Nov 2011 09:52:39 -0600

I may prove wrong, but, it appears to me that since you want to append the results, which is necessarily a serial operation, that parallel will not be able to help you.

 

~Malcolm

 

From: address@hidden [mailto:address@hidden On Behalf Of vijai2007
Sent: Monday, November 07, 2011 11:08 PM
To: address@hidden
Subject: parallel to gunzip and merge .gz files

 

Hello,

I have about 99 files in the file name format:

SRRA_ATCACG_L008_R1_001.fastq.gz to SRRA_ATCACG_L008_R1_099.fastq.gz 

I want to unzip and merge them to a single fastq file.

These are from the Illumina CASAVA 1.8.1

 

How do I do this in GNU parallel?

Thanks

vijai


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