[Savannah-hackers] submission of A system for estimation of codon substitution of genomic fragments - savannah.nongnu.org

[estienne]

A package was submitted to savannah.nongnu.org
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Estienne Swart <address@hidden> described the package as follows:
License: gpl
Other License: 
Package: A system for estimation of codon substitution of genomic fragments
System name: frags
Type: non-GNU

Description:
This software is used for studies of Molecular Evolution and Genomics. It is 
currently used to process a wide variety of different types of sequence data 
from different genomics projects, in order to obtain coding sequence alignments 
prior to calculation of substitution rates. The source code can be obtained 
here: http://www.sanbi.ac.za/cgi-bin/estienne/viewcvs.cgi/progs . It is written 
 in Python, and was developed on a number of *nix platforms, primarily 
GNU/Linux. It leverages databases, utilities, and source code from existing 
Open Source Projects (Ensembl, Genewise, MUMmer, MySQL, BioPython, Paml etc.).

Other Software Required:
MUMmer, BioPython, Numeric Python, Ensembl databases, Paml, BLAST, MySQL

Other Comments:
I'm not entirely sure whether this is a suitable location for this project, but 
I am dissatisfied with the services, licensing, etc. requirements of 
sourceforge, and bioinformatics.org, hence I would prefer to host this project 
here.


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