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Re: [Bkchem-user] Error message

From: FyD
Subject: Re: [Bkchem-user] Error message
Date: Sun, 18 Nov 2007 15:47:03 +0100
User-agent: Internet Messaging Program (IMP) H3 (4.1.3)

Quoting Beda Kosata <address@hidden>:

this is a known problem. It is fixed in the 0.12.0 preview releases
which are in many ways better than 0.11.6, so there should be no reason
not to upgrade.

It works fine after a "local" install if I run:
address@hidden ~]$ python bkchem-0.12.0_pre7/bkchem/bkchem.py

However, I get the following error message if do a "general" install and
I simply run:
address@hidden ~]$ bkchem
Traceback (most recent call last):
   File "/usr/lib/python2.5/site-packages/bkchem/bkchem.py", line 165,
in <module>
   File "/usr/lib/python2.5/site-packages/bkchem/main.py", line 100,
in initialize
   File "/usr/lib/python2.5/site-packages/bkchem/main.py", line 437,
in init_singletons
     Store.gm.add_template_from_CDML( "groups.cdml")
   File "/usr/lib/python2.5/site-packages/bkchem/temp_manager.py",
line 66, in add_template_from_CDML
     m = molecule( Store.app.paper, package=tmp)
   File "/usr/lib/python2.5/site-packages/bkchem/molecule.py", line
89, in __init__
     self.read_package( package)
   File "/usr/lib/python2.5/site-packages/bkchem/molecule.py", line
340, in read_package
     bnd = bond( standard=std, package=b, molecule=self)
File "/usr/lib/python2.5/site-packages/bkchem/bond.py", line 95, in __init__
     self.read_package( package)
   File "/usr/lib/python2.5/site-packages/bkchem/bond.py", line 1117,
in read_package
     self.order = int( type[1])
IndexError: string index out of range

Thanks, F.

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