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bug#49314: Stan package broken

From: Sarah Morgensen
Subject: bug#49314: Stan package broken
Date: Thu, 22 Jul 2021 22:25:37 -0700


Thanks for the bug report.

Kyle Andrews <kyle.c.andrews@gmail.com> writes:


> Error in dyn.load(libLFile) : 
>   unable to load shared object '/tmp/Rtmp1AXXXr/file1ffd36a95fa3.so':
> /gnu/store/741057r2x06zwg6zcmqmdyv51spm6n9i-gfortran-7.5.0-lib/lib/libstdc++.so.6:
>  version `GLIBCXX_3.4.29' not found (required by 
> /tmp/Rtmp1AXXXr/file1ffd36a95fa3.so)

This kind of error typically occurs when something is compiled with a
newer version of GCC/glibc and then linked with an older version. Do you
happen to have a gcc or gcc-toolchain installed in your profile (and
does removing it solve this issue)?

> Error in sink(type = "output") : invalid connection
> I setup my environment with:
> : guix environment --ad-hoc r-rstan r-rstanarm r

Alternatively, you could try

  guix environment --pure --ad-hoc r-rstan r-rstanarm r bash coreutils

(Using --pure prevents packages from your profile being used.)


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