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From: | Holtgrewe, Manuel |
Subject: | Cannot read $HOME/.parallel/tmp/sshlogin/hpc-cpu-144/linelen |
Date: | Wed, 11 Jan 2023 06:58:20 +0000 |
Hi,
I'm running GNU parallel on an HPC system inside jobs scheduled by SLURM. Multiple GNU parallel calls may occur at the same time on the same node and I get the error message from below. My interpretation is that multiple parallel jobs try to access `/data/gpfs-1/users/holtgrem_c/.parallel/tmp/sshlogin/hpc-cpu-144/linelen` which causes issues. Is there a way around this? Best wishes, Manuel parallel: This should not happen. You have found a bug. Please follow https://www.gnu.org/software/parallel/man.html#reporting-bugs Include this in the report: * The version number: 20221122 * The bugid: Cannot read /data/gpfs-1/users/holtgrem_c/.parallel/tmp/sshlogin/hpc-cpu-144/linelen * The command line being run * The files being read (put the files on a webserver if they are big)
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Dr. Manuel Holtgrewe, Dipl.-Inform. Bioinformatician Core Unit Bioinformatics – CUBI Berlin Institute of Health / Max Delbrück Center for Molecular Medicine in the Helmholtz Association / Charité – Universitätsmedizin Berlin Visiting Address: Invalidenstr. 80, 3rd Floor, Room 03 028, 10117 Berlin Postal Address: Chariteplatz 1, 10117 Berlin E-Mail: manuel.holtgrewe@bihealth.de Phone: +49 30 450 543 607 Fax: +49 30 450 7 543 901 Web: cubi.bihealth.org www.bihealth.org www.mdc-berlin.de www.charite.de |
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