bug#36793: closed ([PATCH 04/11] gnu: Add r-flowcore.)

[GNU bug Tracking System]

Your message dated Fri, 21 Feb 2020 18:07:33 +0100
with message-id <CAJ3okZ2GnkOKAPNwz8FwmRbZ+W+pYHiwB=address@hidden>
and subject line patches merged
has caused the debbugs.gnu.org bug report #36797,
regarding [PATCH 04/11] gnu: Add r-flowcore.
to be marked as done.

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-- 
36797: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 04/11] gnu: Add r-flowcore.
>
>
>
>
> Date: 
>
> Wed, 24 Jul 2019 20:21:57 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-flowcore): New variable.
> ---
>  gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
>  1 file changed, 30 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 18b5711496..3a38042537 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -4799,3 +4799,33 @@ read mapping, read counting, SNP calling, structural 
> variant detection and
>  gene fusion discovery.  It can be applied to all major sequencing techologies
>  and to both short and long sequence reads.")
>      (license license:gpl3)))
> +
> +(define-public r-flowcore
> +  (package
> +    (name "r-flowcore")
> +    (version "1.50.0")
> +    (source
> +      (origin
> +        (method url-fetch)
> +        (uri (bioconductor-uri "flowCore" version))
> +        (sha256
> +          (base32
> +            "0pvcyzycsmgc8iw60q9xnhllfan6ihwpz3gvk8h1n9jmhpxzylan"))))
> +    (properties `((upstream-name . "flowCore")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +      `(("r-bh" ,r-bh)
> +        ("r-biobase" ,r-biobase)
> +        ("r-biocgenerics" ,r-biocgenerics)
> +        ("r-corpcor" ,r-corpcor)
> +        ("r-graph" ,r-graph)
> +        ("r-mass" ,r-mass)
> +        ("r-matrixstats" ,r-matrixstats)
> +        ("r-rcpp" ,r-rcpp)
> +        ("r-rrcov" ,r-rrcov)))
> +    (home-page
> +      "https://bioconductor.org/packages/flowCore";)
> +    (synopsis "Basic structures for flow cytometry data")
> +    (description
> +      "Provides S4 data structures and basic functions to deal with flow 
> cytometry data.")
> +    (license license:artistic2.0)))
> -- 
> 2.21.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> patches merged
>
>
>
>
> Date: 
>
> Fri, 21 Feb 2020 18:07:33 +0100
>
>
>
>
> Dear,
>
> All the patches are merged now; except r-flowpeaks. Because this
> package use Artistic1.0 which is not enough clear to be considered
> "free" [1,2] (GNU's point of view [3]) and upstream are not
> responsive, let clean the bug tracker. :-)
>
> [1] https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797#16
> [2] https://lists.gnu.org/archive/html/guix-devel/2019-12/msg00286.html
> [3] https://www.gnu.org/licenses/license-list.en.html#ArtisticLicense
>
> All the best,
> simon
>
>
> --- End Message ---