bug#46448: closed ([PATCH] gnu: bowtie1: Update to 1.3.0.)

[GNU bug Tracking System]

Your message dated Thu, 11 Feb 2021 22:39:33 +0100
with message-id <87sg62p9m2.fsf@elephly.net>
and subject line Fwd: Re: [PATCH] gnu: bowtie1: Update to 1.3.0.
has caused the debbugs.gnu.org bug report #46448,
regarding [PATCH] gnu: bowtie1: Update to 1.3.0.
to be marked as done.

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46448: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=46448
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: bowtie1: Update to 1.3.0.
>
>
>
>
> Date: 
>
> Thu, 11 Feb 2021 22:03:29 +0100
>
>
>
>
> * gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0.
> ---
>  gnu/packages/bioinformatics.scm | 8 ++++----
>  1 file changed, 4 insertions(+), 4 deletions(-)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index cbf08c5dd2..ab149d6aad 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -1654,14 +1654,14 @@ gapped, local, and paired-end alignment modes.")
>  (define-public bowtie1
>    (package
>      (name "bowtie1")
> -    (version "1.2.3")
> +    (version "1.3.0")
>      (source (origin
>                (method url-fetch)
>                (uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/"
> -                                  version "/bowtie-src-x86_64.zip"))
> +                                  version "/bowtie-" version "-src.zip"))
>                (sha256
>                 (base32
> -                "0vmiqdhc9dzyfy9sh6vgi7k9xy2hiw8g87vbamnc6cgpm179zsa4"))
> +                "11dbihdnrizc6qhx9xsw77w3q5ssx642alaqzvhxx32ak9glvq04"))
>                (modules '((guix build utils)))
>                (snippet
>                 '(substitute* "Makefile"
> @@ -1672,7 +1672,7 @@ gapped, local, and paired-end alignment modes.")
>      (arguments
>       '(#:tests? #f                      ; no "check" target
>         #:make-flags
> -       (list "all"
> +       (list "CC=gcc" "all"
>               (string-append "prefix=" (assoc-ref %outputs "out")))
>         #:phases
>         (modify-phases %standard-phases
> -- 
> 2.30.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Fwd: Re: [PATCH] gnu: bowtie1: Update to 1.3.0.
>
>
>
>
> Date: 
>
> Thu, 11 Feb 2021 22:39:33 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.4.14; emacs 27.1
>
>
>
>
> Ricardo Wurmus <rekado@elephly.net> writes:
>
> > Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
> >
> >> * gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0.
> >
> > Pushed with commit 160e4a95e7 with a slightly changed commit message to
> > mention the change to the “arguments” field.
> >
> > Thanks!
>
>
> -- 
> Ricardo
>
>
> --- End Message ---