bug#51461: closed ([PATCH] gnu: Add r-zellkonverter.)

[GNU bug Tracking System]

Your message dated Mon, 01 Nov 2021 22:23:21 +0000
with message-id <87mtmntsze.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-zellkonverter.
has caused the debbugs.gnu.org bug report #51461,
regarding [PATCH] gnu: Add r-zellkonverter.
to be marked as done.

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-- 
51461: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=51461
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-zellkonverter.
>
>
>
>
> Date: 
>
> Thu, 28 Oct 2021 17:12:04 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-zellkonverter): New variable.
> ---
>  gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
>  1 file changed, 32 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 90a0e1f288..ce3a4badce 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -4682,6 +4682,38 @@ (define-public r-zlibbioc
>  libraries for systems that do not have these available via other means.")
>      (license license:artistic2.0)))
>  
> +(define-public r-zellkonverter
> +  (package
> +    (name "r-zellkonverter")
> +    (version "1.4.0")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "zellkonverter" version))
> +       (sha256
> +        (base32 "1ihp2f23lpdfgf3qliy22vrq8czm353hyhqf74r5r712190k6pgg"))))
> +    (properties `((upstream-name . "zellkonverter")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     `(("r-basilisk" ,r-basilisk)
> +       ("r-cli" ,r-cli)
> +       ("r-delayedarray" ,r-delayedarray)
> +       ("r-matrix" ,r-matrix)
> +       ("r-reticulate" ,r-reticulate)
> +       ("r-s4vectors" ,r-s4vectors)
> +       ("r-singlecellexperiment" ,r-singlecellexperiment)
> +       ("r-summarizedexperiment" ,r-summarizedexperiment)))
> +    (native-inputs `(("r-knitr" ,r-knitr)))
> +    (home-page "https://github.com/theislab/zellkonverter";)
> +    (synopsis "Conversion between AnnData and single-cell experiments objects")
> +    (description
> +     "This package provides methods to convert between Python AnnData objects
> +and SingleCellExperiment objects.  These are primarily intended for use by
> +downstream Bioconductor packages that wrap Python methods for single-cell data
> +analysis.  It also includes functions to read and write H5AD files used for
> +saving AnnData objects to disk.")
> +    (license license:expat)))
> +
>  (define-public r-geneplotter
>    (package
>      (name "r-geneplotter")
> -- 
> 2.33.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-zellkonverter.
>
>
>
>
> Date: 
>
> Mon, 01 Nov 2021 22:23:21 +0000
>
>
>
>
> User-agent: 
>
> mu4e 1.6.6; emacs 27.2
>
>
>
>
> Applied and pushed to the “r-updates” branch, which will shortly 
> be merged into the “master” branch.
>
> --
> Ricardo
>
>
> --- End Message ---