bug#51511: closed ([PATCH] gnu: Add r-xmapbridge.)

[GNU bug Tracking System]

Your message dated Sat, 27 Nov 2021 10:44:34 +0100
with message-id <87a6hqoru0.fsf@elephly.net>
and subject line Re: [PATCH] gnu: Add r-xmapbridge.
has caused the debbugs.gnu.org bug report #51511,
regarding [PATCH] gnu: Add r-xmapbridge.
to be marked as done.

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51511: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=51511
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-xmapbridge.
>
>
>
>
> Date: 
>
> Sat, 30 Oct 2021 16:20:35 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-xmapbridge): New variable.
> ---
>  gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
>  1 file changed, 27 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 90a0e1f288..24ab4897d5 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -4627,6 +4627,33 @@ (define-public r-vsn
>  and specific in detecting differential transcription.")
>      (license license:artistic2.0)))
>  
> +(define-public r-xmapbridge
> +  (package
> +    (name "r-xmapbridge")
> +    (version "1.52.0")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "xmapbridge" version))
> +       (sha256
> +        (base32 "1zsqhisbq6f9qgw9f0a6ixxh635h3qm17117yfns5nnfw73ndlgi"))))
> +    (properties `((upstream-name . "xmapbridge")))
> +    (build-system r-build-system)
> +    (home-page "https://git.bioconductor.org/packages/xmapbridge";)
> +    (synopsis "Display numeric data in the web based genome browser X:MAP")
> +    (description
> +     "The package @code{r-xmapBridge} can plot graphs in the X:Map genome
> +browser.  X:Map uses the Google Maps API to provide a scrollable view of the
> +genome.  It supports a number of species, and can be accessed at
> +http://xmap.picr.man.ac.uk.  This package exports plotting files in a suitable
> +format.  Graph plotting in R is done using calls to the functions
> +@code{xmap.plot} and @code{xmap.points}, which have parameters that aim to be
> +similar to those used by the standard plot methods in R.  These result in data
> +being written to a set of files (in a specific directory structure) that
> +contain the data to be displayed, as well as some additional meta-data
> +describing each of the graphs.")
> +    (license license:lgpl3)))
> +
>  (define-public r-xvector
>    (package
>      (name "r-xvector")
> -- 
> 2.33.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [PATCH] gnu: Add r-xmapbridge.
>
>
>
>
> Date: 
>
> Sat, 27 Nov 2021 10:44:34 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.6.10; emacs 28.0.50
>
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> 
> writes:
>
> > * gnu/packages/bioconductor.scm (r-xmapbridge): New variable.
>
> Applied, thank you!
>
> --
> Ricardo
>
>
> --- End Message ---