bug#56812: closed ([PATCH] gnu: Add r-muscat.)

[GNU bug Tracking System]

Your message dated Mon, 01 Aug 2022 17:45:45 +0200
with message-id <87bkt4nf0q.fsf@elephly.net>
and subject line Re: [bug#56812] [PATCH] gnu: Add r-muscat.
has caused the debbugs.gnu.org bug report #56812,
regarding [PATCH] gnu: Add r-muscat.
to be marked as done.

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-- 
56812: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56812
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-muscat.
>
>
>
>
> Date: 
>
> Thu, 28 Jul 2022 12:18:00 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-muscat): New variable.
> ---
>  gnu/packages/bioconductor.scm | 50 +++++++++++++++++++++++++++++++++++
>  1 file changed, 50 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 31484799b2..c79787cea2 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -4629,6 +4629,56 @@ (define-public r-motifrg
>  throughput genetic sequencing data sets using regression methods.")
>      (license license:artistic2.0)))
>  
> +(define-public r-muscat
> +  (package
> +    (name "r-muscat")
> +    (version "1.10.1")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (bioconductor-uri "muscat" version))
> +       (sha256
> +        (base32
> +         "1j3zkhqgza92vdykb1yia1jjwsdqra6q9c0jk6p5p2x0778xqgfd"))))
> +    (properties `((upstream-name . "muscat")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-biocparallel
> +           r-blme
> +           r-complexheatmap
> +           r-data-table
> +           r-deseq2
> +           r-dplyr
> +           r-edger
> +           r-ggplot2
> +           r-glmmtmb
> +           r-limma
> +           r-lme4
> +           r-lmertest
> +           r-matrix
> +           r-matrixstats
> +           r-progress
> +           r-purrr
> +           r-s4vectors
> +           r-scales
> +           r-scater
> +           r-sctransform
> +           r-scuttle
> +           r-singlecellexperiment
> +           r-summarizedexperiment
> +           r-variancepartition
> +           r-viridis))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://github.com/HelenaLC/muscat";)
> +    (synopsis "Multi-sample multi-group scRNA-seq data analysis tools")
> +    (description
> +     "This package @code{muscat} provides various methods and visualization 
> tools
> +for @dfn{DS}(differential splicing) analysis in multi-sample, multi-group,
> +multi-(cell-)subpopulation scRNA-seq data, including cell-level mixed models 
> and
> +methods based on aggregated \"pseudobulk\" data, as well as a flexible 
> simulation
> +platform that mimics both single and multi-sample scRNA-seq data.")
> +    (license license:gpl3)))
> +
>  (define-public r-mutationalpatterns
>    (package
>      (name "r-mutationalpatterns")
>
> base-commit: dbcd7876566840f31b763e28bb74394f0914b397
> -- 
> 2.37.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#56812] [PATCH] gnu: Add r-muscat.
>
>
>
>
> Date: 
>
> Mon, 01 Aug 2022 17:45:45 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.6.11; emacs 28.1
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > * gnu/packages/bioconductor.scm (r-muscat): New variable.
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---