bug#59672: closed ([PATCH] gnu: Add r-metaneighbor.)

[GNU bug Tracking System]

Your message dated Thu, 01 Dec 2022 11:50:28 +0100
with message-id <87h6yfjt31.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-metaneighbor.
has caused the debbugs.gnu.org bug report #59672,
regarding [PATCH] gnu: Add r-metaneighbor.
to be marked as done.

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-- 
59672: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=59672
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-metaneighbor.
>
>
>
>
> Date: 
>
> Tue, 29 Nov 2022 09:00:56 +0100
>
>
>
>
> * gnu/packages/bioconductor.scm (r-metaneighbor): New variable.
> ---
>  gnu/packages/bioconductor.scm | 36 +++++++++++++++++++++++++++++++++++
>  1 file changed, 36 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 39c9c6f809..c3e0548b45 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -6010,6 +6010,42 @@ (define-public r-made4
>  datasets (coinertia analysis).")
>      (license license:artistic2.0)))
>  
> +(define-public r-metaneighbor
> +  (package
> +    (name "r-metaneighbor")
> +    (version "1.18.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "MetaNeighbor" version))
> +              (sha256
> +               (base32
> +                "1gjjp5qlmv26sd3fvrd8cgv3invckxr8ldjpizpqm4mxjzifxwpm"))))
> +    (properties `((upstream-name . "MetaNeighbor")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-beanplot
> +           r-dplyr
> +           r-ggplot2
> +           r-gplots
> +           r-igraph
> +           r-matrix
> +           r-matrixstats
> +           r-rcolorbrewer
> +           r-singlecellexperiment
> +           r-summarizedexperiment
> +           r-tibble
> +           r-tidyr))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://bioconductor.org/packages/MetaNeighbor";)
> +    (synopsis "Single cell replicability analysis")
> +    (description
> +     "This package implements a method to rapidly assess cell type identity 
> using
> +both functional and random gene sets and it allows users to quantify cell type
> +replicability across datasets using neighbor voting.  @code{MetaNeighbor} works
> +on the basis that cells of the same type should have more similar gene 
> expression
> +profiles than cells of different types.")
> +    (license license:expat)))
> +
>  (define-public r-methylkit
>    (package
>      (name "r-methylkit")
>
> base-commit: 3578fb1323db3f0eadd5749e51095e5f196d78c7
> -- 
> 2.38.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-metaneighbor.
>
>
>
>
> Date: 
>
> Thu, 01 Dec 2022 11:50:28 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---