bug#60785: closed ([PATCH] gnu: Add r-maser.)

[GNU bug Tracking System]

Your message dated Sat, 14 Jan 2023 08:18:33 +0100
with message-id <87wn5pk2hy.fsf@elephly.net>
and subject line Re: [bug#60785] [PATCH] gnu: Add r-maser.
has caused the debbugs.gnu.org bug report #60785,
regarding [PATCH] gnu: Add r-maser.
to be marked as done.

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60785: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=60785
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> --- Begin Message ---
>
>
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> Subject: 
>
> [PATCH] gnu: Add r-maser.
>
>
>
>
> Date: 
>
> Fri, 13 Jan 2023 16:07:16 +0100
>
>
>
>
> * gnu/packages/bioconductor.scm (r-maser): New variable.
> ---
>  gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
>  1 file changed, 32 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index c2fa26cb59..ca236bcf75 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -6274,6 +6274,38 @@ (define-public r-makecdfenv
>  package that automatically loads that environment.")
>      (license license:gpl2+)))
>  
> +(define-public r-maser
> +  (package
> +    (name "r-maser")
> +    (version "1.16.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "maser" version))
> +              (sha256
> +               (base32
> +                "1zycx8s046g4d3w5qrn950bmi0nrnq1g7fvqji48mr6hmsyzplvv"))))
> +    (properties `((upstream-name . "maser")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-biocgenerics
> +           r-data-table
> +           r-dplyr
> +           r-dt
> +           r-genomeinfodb
> +           r-genomicranges
> +           r-ggplot2
> +           r-gviz
> +           r-iranges
> +           r-reshape2
> +           r-rtracklayer))
> +    (native-inputs (list r-knitr))
> +    (home-page "https://github.com/DiogoVeiga/maser";)
> +    (synopsis "Mapping alternative splicing events to proteins")
> +    (description
> +     "This package provides functionalities for downstream analysis, annotation
> +and visualizaton of alternative splicing events generated by rMATS.")
> +    (license license:expat)))
> +
>  (define-public r-metaneighbor
>    (package
>      (name "r-metaneighbor")
>
> base-commit: 789d73234d5b6bbd83bb054146d5bbd1d374d51a
> -- 
> 2.38.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#60785] [PATCH] gnu: Add r-maser.
>
>
>
>
> Date: 
>
> Sat, 14 Jan 2023 08:18:33 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.13; emacs 28.2
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > * gnu/packages/bioconductor.scm (r-maser): New variable.
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---