bug#60957: closed ([PATCH 1/2] gnu: Add r-doubletcollection.)

[GNU bug Tracking System]

Your message dated Fri, 20 Jan 2023 11:07:44 +0100
with message-id <87r0vph62e.fsf@elephly.net>
and subject line [PATCH 1/2] gnu: Add r-doubletcollection.
has caused the debbugs.gnu.org bug report #60957,
regarding [PATCH 1/2] gnu: Add r-doubletcollection.
to be marked as done.

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-- 
60957: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=60957
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/2] gnu: Add r-doubletcollection.
>
>
>
>
> Date: 
>
> Fri, 20 Jan 2023 09:57:59 +0100
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-doubletcollection): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 40 +++++++++++++++++++++++++++++++++
>  1 file changed, 40 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 36c9db90bd..86d65d2031 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -7986,6 +7986,46 @@ (define-public r-chromunity
>  Pore-C concatemers.")
>        (license license:gpl3))))
>  
> +(define-public r-doubletcollection
> +  (let ((commit "c0d62f1853942ee6a087eaf7b000d9e4261e2dfd")
> +        (revision "1"))
> +    (package
> +      (name "r-doubletcollection")
> +      (version (git-version "1.1.0" revision commit))
> +      (source (origin
> +                (method git-fetch)
> +                (uri (git-reference
> +                      (url "https://github.com/xnnba1984/DoubletCollection";)
> +                      (commit commit)))
> +                (file-name (git-file-name name version))
> +                (sha256
> +                 (base32
> +                  "02cvibyc2nwc4037ramm5cskjwyrb9ib9hkrfhmvhbslkn5ixz1v"))))
> +      (properties `((upstream-name . "DoubletCollection")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-biocgenerics
> +                               r-doubletfinder
> +                               r-gam
> +                               r-ggplot2
> +                               r-ggthemes
> +                               r-mast
> +                               r-mclust
> +                               r-prroc
> +                               r-reticulate
> +                               r-scales
> +                               r-scdblfinder
> +                               r-scds
> +                               r-seurat
> +                               r-singlecellexperiment
> +                               r-slingshot
> +                               r-summarizedexperiment))
> +      (home-page "https://github.com/xnnba1984/DoubletCollection";)
> +      (synopsis "Tool for finding doublets in scRNA-seq data")
> +      (description
> +       "This is an R package that integrates the installation of 
> doublet-detection methods.  
> +In addition, this tool is used for execution and benchmark of those eight 
> mentioned methods.")
> +      (license license:gpl3+))))
> +
>  (define-public r-pando
>    (package
>      (name "r-pando")
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/2] gnu: Add r-doubletcollection.
>
>
>
>
> Date: 
>
> Fri, 20 Jan 2023 11:07:44 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.13; emacs 28.2
>
>
>
>
> Thanks for the patch.  Applied!
>
> -- 
> Ricardo
>
>
> --- End Message ---