bug#72877: closed ([PATCH 0/8] Upgrade PETSc, SLEPc, SUNDIALS, and DealII)

[GNU bug Tracking System]

Your message dated Thu, 05 Sep 2024 10:17:27 +0200
with message-id <87seue8qg8.fsf@gnu.org>
and subject line Re: [bug#72877] [PATCH 0/8] Upgrade PETSc, SLEPc, SUNDIALS, 
and DealII
has caused the debbugs.gnu.org bug report #72877,
regarding [PATCH 0/8] Upgrade PETSc, SLEPc, SUNDIALS, and DealII
to be marked as done.

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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 0/8] Upgrade PETSc, SLEPc, SUNDIALS, and DealII
>
>
>
>
> Date: 
>
> Thu, 29 Aug 2024 17:38:43 +0200
>
>
>
>
> Hello Guix!
>
> The impetus for this patch series is that PETSc fails to build on
> ‘core-updates’ (soon to be merged) and it’s pretty critical in
> applied maths and HPC:
>
> --8<---------------cut here---------------start------------->8---
> Using MAKE: /gnu/store/lc6r1mh0jlcwixjziiw1zsx1my478rv1-make-4.4.1/bin/make
> Using MAKEFLAGS: -j16 -l96.0 w -- 
> PETSC_DIR=/tmp/guix-build-petsc-3.16.1.drv-0/petsc-3.16.1 
> PETSC_ARCH=arch-linux-c-opt MAKE_NP=16
> ==========================================
> make[3]: Entering directory '/tmp/guix-build-petsc-3.16.1.drv-0/petsc-3.16.1'
> /gnu/store/nvpcidxh4wqp5prdlyfsbcymg67xqqn9-python-3.10.7/bin/python3 
> ./config/gmakegen.py --petsc-arch=arch-linux-c-opt
> /gnu/store/nvpcidxh4wqp5prdlyfsbcymg67xqqn9-python-3.10.7/bin/python3 
> /tmp/guix-build-petsc-3.16.1.drv-0/petsc-3.16.1/config/gmakegentest.py 
> --petsc-dir=/tmp/guix-build-petsc-3.16.1.drv-0/petsc-3.16.1 
> --petsc-arch=arch-linux-c-opt --testdir=./arch-linux-c-opt/tests
> make[3]: *** No rule to make target 'w'.  Stop.
> make[3]: Leaving directory '/tmp/guix-build-petsc-3.16.1.drv-0/petsc-3.16.1'
> make[2]: *** 
> [/tmp/guix-build-petsc-3.16.1.drv-0/petsc-3.16.1/lib/petsc/conf/rules:50: libs] 
> Error 2
> make[2]: Leaving directory '/tmp/guix-build-petsc-3.16.1.drv-0/petsc-3.16.1'
> egrep: warning: egrep is obsolescent; using grep -E
> egrep: warning: egrep is obsolescent; using grep -E
> **************************ERROR*************************************
>   Error during compile, check arch-linux-c-opt/lib/petsc/conf/make.log
>   Send it and arch-linux-c-opt/lib/petsc/conf/configure.log to 
> petsc-maint@mcs.anl.gov
> ********************************************************************
> make[1]: *** [makefile:40: all] Error 1
> make: *** [GNUmakefile:9: all] Error 2
> error: in phase 'build': uncaught exception:
> %exception #<&invoke-error program: "make" arguments: ("MAKE_NP=16") 
> exit-status: 2 term-signal: #f stop-signal: #f> 
> phase `build' failed after 9.7 seconds
> command "make" "MAKE_NP=16" failed with status 2
> build process 18 exited with status 256
> builder for `/gnu/store/wxzwzjlcq10grqrjl9w144fv3myr0kf9-petsc-3.16.1.drv' 
> failed with exit code 1
> --8<---------------cut here---------------end--------------->8---
>
> (From 
> <https://ci.guix.gnu.org/log/4pncdcw7lmls9fi0978fabypv7ili7wb-petsc-3.16.1>.)
>
> Ironically I tested this on top of today’s ‘master’ but I’m hopeful that it’ll
> work on ‘core-updates’ (because of this, I think we should get this series
> merged shortly once ‘core-updates’ is merged).
>
> I rebuilt all dependents, but ‘fenics’ and its dependents remain broken:
> fenics, python-vedo, and python-dolfin-adjoint.
>
> Thanks,
> Ludo’.
>
> Ludovic Courtès (8):
>   gnu: petsc: Update to 3.21.4.
>   gnu: python-petsc4py: Update to 3.21.4.
>   gnu: slepc: Update to 3.21.1.
>   gnu: python-slepc4py: Update to 3.21.1.
>   gnu: petsc: Make ‘petscvariables’ reproducible.
>   gnu: sundials: Upgrade to 7.1.1.
>   gnu: sundials, sundials-openmpi: Use gexps.
>   gnu: dealii: Update to 9.6.0.
>
>  gnu/packages/maths.scm | 190 ++++++++++++++++++++++-------------------
>  1 file changed, 100 insertions(+), 90 deletions(-)
>
>
> base-commit: d5312370b46ace47e138d84e1bb28e5651cee94b
> -- 
> 2.45.2
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#72877] [PATCH 0/8] Upgrade PETSc, SLEPc, SUNDIALS, and DealII
>
>
>
>
> Date: 
>
> Thu, 05 Sep 2024 10:17:27 +0200
>
>
>
>
> User-agent: 
>
> Gnus/5.13 (Gnus v5.13)
>
>
>
>
> Hi,
>
> Ludovic Courtès <ludo@gnu.org> skribis:
>
> >   gnu: petsc: Update to 3.21.4.
> >   gnu: python-petsc4py: Update to 3.21.4.
> >   gnu: slepc: Update to 3.21.1.
> >   gnu: python-slepc4py: Update to 3.21.1.
> >   gnu: petsc: Make ‘petscvariables’ reproducible.
> >   gnu: sundials: Upgrade to 7.1.1.
> >   gnu: sundials, sundials-openmpi: Use gexps.
> >   gnu: dealii: Update to 9.6.0.
>
> Pushed as 993d6d2e7be4dac738629c76a51058f4dc5bc449 after re-testing
> locally.
>
> I had to fix ‘hypre’ as well in 6bf70cf9a60464701ca0741d9f63f5ace9810fc9
> since it broke on ‘core-updates’ due to a missing TeX Live dependency.
>
> Ludo’.
>
>
> --- End Message ---