Well, first, once again (I don't get tired of doing this) let me congratulate the org developer for such an awesome piece of software!
I use org to implement GTD, and most of my list management lies in emacs+org. However, for reference material and notes (that are reference in nature) I use tomboy. I have two inboxes: Remember and Tomboy.
When I feel the data is amorphous (I'm not sure yet what it means) I just dump it in inbox.org through Remember to then process -- it may turn out to be reference material and may go to tomboy. However,
if it's a note, blog post draft, or any other data that is is bigger in nature and has a reference and that will probably not be accessed that often, I dump into tomboy.
I have a main gtd.org file and in its top I have a list of other org files that I have, for example:
* Workout plan - [[workout.org]] * Nutrition - [[nutrition.org]]
What I would like to do is create a link to a tomboy note. I'm sure it would be possible somehow, but I have no idea how though. Something like:
* Check out Blog post draft [[tomboy:"my draft"]]
And C-u C-o on it would open this tomboy note in tomboy.