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Re: [O] [babel] [bug] bug in R-specific header argument for graphics dri
From: |
Rainer M Krug |
Subject: |
Re: [O] [babel] [bug] bug in R-specific header argument for graphics driver |
Date: |
Mon, 19 Mar 2012 15:35:07 +0100 |
User-agent: |
Mozilla/5.0 (X11; Linux i686; rv:11.0) Gecko/20120309 Thunderbird/11.0 |
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On 19/03/12 15:17, Eric Schulte wrote:
> Hi Rainer,
>
> I see you CC'd me on this email. I personally do not know anything about how
> the graphics
> header argument to R code blocks works.
Sorry - I thought it was part of babel, and when I hear "babel", I think "eric
knows it"...
> I would recommend looking deeper into the behavior using the following tools
>
> - Look at the expanded code block body using org-babel-expand-src-block - Run
> the code block in
> a session, and then look into the session buffer to see what R code is being
> generated by
> Babel, then try to debug the R as you would normally - look into the
> temporary R scripts
> generated during execution, which will live in a directory with a name like
> /tmp/babel-XXXXXX
Good idea - I'll look into it and give you feedback.
>
> If you are able to isolate a bug in Babel then I can help fix that bug in the
> elisp code.
Thanks - I still haven't managed to get into (e)lisp...
>
> Thanks and sorry I can't be of more immediate,
No problem,
Cheers,
Rainer
>
> Rainer M Krug <address@hidden> writes:
>
>> I did not get any response so far, so I hope that the email did not went
>> out...
>>
>> Rainer
>>
>>
> When giving the header argument :title: the graph is not produced in a file:
>
> * This works Display boxplot of spread of Mff over time for each release
> strategy :PROPERTIES:
> :results: graphics :file: SpreadOverTime.pdf :width: 4 :height: 8 :pointsize:
> 8 :END:
> #+begin_src R plot(runif(100)) #+end_src
>
> * This doesn't Display boxplot of spread of Mff over time for each release
> strategy
> :PROPERTIES: :results: graphics :file: test.pdf :width: 4 :height: 8
> :pointsize: 8 :title:
> "test" :END: #+begin_src R plot(runif(100)) #+end_src
>
> Error message:
>
> Error in pdf(file = "test.pdf", width = 4, height = 8, pointsize = 8, :
> object 'test' not
> found Calls: <Anonymous> -> <Anonymous> -> pdf Execution halted
>
> Cheers,
>
> Rainer
>
>
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys.
(Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: address@hidden
Skype: RMkrug
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