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Re: Problem with org-babel and geiser

From: Ihor Radchenko
Subject: Re: Problem with org-babel and geiser
Date: Sat, 05 Feb 2022 19:39:16 +0800

Bob Heffernan <bob.heffernan@gmail.com> writes:

> Thank you for your response.
> The patch you linked does seem to be intended to fix this issue.
> However, I have no experience with applying a patch (to Emacs or anything 
> else).
> On my system, ob-scheme.el.gz can be found at
> /usr/share/emacs/27.2/lisp/org
> can I uncompress the file, patch that, then compress again?
> Or, would I need to download the Emacs source, apply the patch and then 
> recompile?

It's not a good idea to modify Org packaged together with Emacs. For
testing, you can just use the attached version of ob-scheme.el. Load
your Emacs and Org mode, open the attached ob-scheme.el, and run M-x
eval-buffer. That should be sufficient to test the proposed patch on
your side.

If the patch solves the problem you are experiencing, let us know. I
will then apply the proposed patch upstream.

Note that even if I apply the patch, it will only be available on the
latest version of Org mode (Org 9.5.2). It is _not_ what is shipped
together with your Emacs. You will need to upgrade your Org mode using
M-x package-install. See
https://orgmode.org/manual/Installation.html#Installation for details.


;;; ob-scheme.el --- Babel Functions for Scheme      -*- lexical-binding: t; -*-

;; Copyright (C) 2010-2022 Free Software Foundation, Inc.

;; Authors: Eric Schulte
;;          Michael Gauland
;; Keywords: literate programming, reproducible research, scheme
;; Homepage: https://orgmode.org

;; This file is part of GNU Emacs.

;; GNU Emacs is free software: you can redistribute it and/or modify
;; it under the terms of the GNU General Public License as published by
;; the Free Software Foundation, either version 3 of the License, or
;; (at your option) any later version.

;; GNU Emacs is distributed in the hope that it will be useful,
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; GNU General Public License for more details.

;; You should have received a copy of the GNU General Public License
;; along with GNU Emacs.  If not, see <https://www.gnu.org/licenses/>.

;;; Commentary:

;; Now working with SBCL for both session and external evaluation.
;; This certainly isn't optimally robust, but it seems to be working
;; for the basic use cases.

;;; Requirements:

;; - a working scheme implementation
;;   (e.g. guile https://www.gnu.org/software/guile/guile.html)
;; - for session based evaluation geiser is required, which is available from
;;   ELPA.

;;; Code:
(require 'ob)
(require 'geiser nil t)
(require 'geiser-impl nil t)
(defvar geiser-repl--repl)             ; Defined in geiser-repl.el
(defvar geiser-impl--implementation)   ; Defined in geiser-impl.el
(defvar geiser-scheme-implementation)  ; Defined in geiser-impl.el
(defvar geiser-default-implementation) ; Defined in geiser-impl.el
(defvar geiser-active-implementations) ; Defined in geiser-impl.el
(defvar geiser-debug-show-debug-p)     ; Defined in geiser-debug.el
(defvar geiser-debug-jump-to-debug-p)  ; Defined in geiser-debug.el
(defvar geiser-repl-use-other-window)  ; Defined in geiser-repl.el
(defvar geiser-repl-window-allow-split) ; Defined in geiser-repl.el

(declare-function run-geiser "ext:geiser-repl" (impl))
(declare-function geiser-mode "ext:geiser-mode" ())
(declare-function geiser-eval-region "ext:geiser-mode"
                  (start end &optional and-go raw nomsg))
(declare-function geiser-repl-exit "ext:geiser-repl" (&optional arg))
(declare-function geiser-eval--retort-output "ext:geiser-eval" (ret))
(declare-function geiser-eval--retort-result-str "ext:geiser-eval" (ret prefix))

(defcustom org-babel-scheme-null-to 'hline
  "Replace `null' and empty lists in scheme tables with this before returning."
  :group 'org-babel
  :version "26.1"
  :package-version '(Org . "9.1")
  :type 'symbol)

(defvar org-babel-default-header-args:scheme '()
  "Default header arguments for scheme code blocks.")

(defun org-babel-expand-body:scheme (body params)
  "Expand BODY according to PARAMS, return the expanded body."
  (let ((vars (org-babel--get-vars params))
        (prepends (cdr (assq :prologue params)))
        (postpends (cdr (assq :epilogue params))))
    (concat (and prepends (concat prepends "\n"))
            (if (null vars) body
              (format "(let (%s)\n%s\n)"
                       (lambda (var)
                         (format "%S" (print `(,(car var) ',(cdr var)))))
                       "\n      ")
            (and postpends (concat "\n" postpends)))))

(defvar org-babel-scheme-repl-map (make-hash-table :test #'equal)
  "Map of scheme sessions to session names.")

(defun org-babel-scheme-cleanse-repl-map ()
  "Remove dead buffers from the REPL map."
   (lambda (x y) (unless (buffer-name y) (remhash x org-babel-scheme-repl-map)))

(defun org-babel-scheme-get-session-buffer (session-name)
  "Look up the scheme buffer for a session; return nil if it doesn't exist."
  (org-babel-scheme-cleanse-repl-map) ; Prune dead sessions
  (gethash session-name org-babel-scheme-repl-map))

(defun org-babel-scheme-set-session-buffer (session-name buffer)
  "Record the scheme buffer used for a given session."
  (puthash session-name buffer org-babel-scheme-repl-map))

(defun org-babel-scheme-get-buffer-impl (buffer)
  "Return the scheme implementation geiser associates with the buffer."
  (with-current-buffer (set-buffer buffer)

(defun org-babel-scheme-get-repl (impl name)
  "Switch to a scheme REPL, creating it if it doesn't exist."
  (let ((buffer (org-babel-scheme-get-session-buffer name)))
    (or buffer
          (run-geiser impl)
          (when name
            (rename-buffer name t)
            (org-babel-scheme-set-session-buffer name (current-buffer)))

(defun org-babel-scheme-make-session-name (buffer name impl)
  "Generate a name for the session buffer.

For a named session, the buffer name will be the session name.

If the session is unnamed (nil), generate a name.

If the session is `none', use nil for the session name, and
org-babel-scheme-execute-with-geiser will use a temporary session."
  (cond ((not name) (concat buffer " " (symbol-name impl) " REPL"))
        ((string= name "none") nil)

(defmacro org-babel-scheme-capture-current-message (&rest body)
  "Capture current message in both interactive and noninteractive mode."
  `(if noninteractive
       (let ((original-message (symbol-function 'message))
             (current-message nil))
               (defun message (&rest args)
                 (setq current-message (apply original-message args)))
           (fset 'message original-message)))

(defun org-babel-scheme-execute-with-geiser (code output impl repl)
  "Execute code in specified REPL.
If the REPL doesn't exist, create it using the given scheme

Returns the output of executing the code if the OUTPUT parameter
is true; otherwise returns the last value."
  (let ((result nil))
      (insert (format ";; -*- geiser-scheme-implementation: %s -*-" impl))
      (insert code)
      (let ((geiser-repl-window-allow-split nil)
            (geiser-repl-use-other-window nil))
        (let ((repl-buffer (save-current-buffer
                             (org-babel-scheme-get-repl impl repl))))
          (when (not (eq impl (org-babel-scheme-get-buffer-impl
            (message "Implementation mismatch: %s (%s) %s (%s)" impl (symbolp 
                     (org-babel-scheme-get-buffer-impl (current-buffer))
                     (symbolp (org-babel-scheme-get-buffer-impl
          (setq geiser-repl--repl repl-buffer)
          (setq geiser-impl--implementation nil)
          (let ((geiser-debug-jump-to-debug-p nil)
                (geiser-debug-show-debug-p nil))
            (let ((ret (funcall
                        ;; use `geiser-eval-region/wait' only when available
                        ;; in newer versions of `geiser'
                        (if (fboundp 'geiser-eval-region/wait)
              (setq result (if output
                               (or (geiser-eval--retort-output ret)
                                   "Geiser Interpreter produced no output")
                             (geiser-eval--retort-result-str ret "")))))
          (when (not repl)
            (save-current-buffer (set-buffer repl-buffer)
            (set-process-query-on-exit-flag (get-buffer-process repl-buffer) 
            (kill-buffer repl-buffer)))))

(defun org-babel-scheme--table-or-string (results)
  "Convert RESULTS into an appropriate elisp value.
If the results look like a list or tuple, then convert them into an
Emacs-lisp table, otherwise return the results as a string."
  (let ((res (org-babel-script-escape results)))
    (cond ((listp res)
           (mapcar (lambda (el)
                     (if (or (null el) (eq el 'null))
          (t res))))

(defun org-babel-execute:scheme (body params)
  "Execute a block of Scheme code with org-babel.
This function is called by `org-babel-execute-src-block'."
  (let* ((source-buffer (current-buffer))
         (source-buffer-name (replace-regexp-in-string ;; zap surrounding *
                              "^ ?\\*\\([^*]+\\)\\*" "\\1"
                              (buffer-name source-buffer))))
      (let* ((result-type (cdr (assq :result-type params)))
             (impl (or (when (cdr (assq :scheme params))
                         (intern (cdr (assq :scheme params))))
                       (car geiser-active-implementations)))
             (session (org-babel-scheme-make-session-name
                       source-buffer-name (cdr (assq :session params)) impl))
             (full-body (org-babel-expand-body:scheme body params))
             (result-params (cdr (assq :result-params params)))
               full-body                       ; code
               (string= result-type "output")  ; output?
               impl                            ; implementation
               (and (not (string= session "none")) session)))) ; session
        (let ((table
                (org-babel-pick-name (cdr (assq :colname-names params))
                                     (cdr (assq :colnames params)))
                (org-babel-pick-name (cdr (assq :rowname-names params))
                                     (cdr (assq :rownames params))))))
          (org-babel-result-cond result-params
            (org-babel-scheme--table-or-string table)))))))

(provide 'ob-scheme)

;;; ob-scheme.el ends here

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