[Espressomd-maintainer] Build failed in Jenkins: master-fetch-bootstrap #753

[Jenkins Demon]

See <http://espressomd.org/jenkins/job/master-fetch-bootstrap/753/changes>

Changes:

[b.m.tanygin] Hiding the known Cuda issue of rerun

[b.m.tanygin] Semi-Integrated Verlet Schema Method

[b.m.tanygin] Gamma per particle enable for SEMI_INTEGRATED & dimension fixes

[b.m.tanygin] Fixed total energy

[b.m.tanygin] Removed rescale for the SEMI_INTEGRATED feature

[b.m.tanygin] Rotation motion in scope of SEMI_INTEGRATED sim model

[b.m.tanygin] Fix of build in case of non-SEMI_INTEGRATED mode

[b.m.tanygin] Added the WALL_BACK capabilities

[b.m.tanygin] WALL_BACK_Z removal

[b.m.tanygin] SEMI_INTEGRATED Velocity-Verlet method modification

[b.m.tanygin] Added Travis builds for SEMI_INTEGRATED method

[b.m.tanygin] Fix of the generic build

[b.m.tanygin] Build fix

[b.m.tanygin] Travis fix

[b.m.tanygin] Fix of the Analysis.tcl test

[b.m.tanygin] Fix the langevin.tcl test

[b.m.tanygin] Fix the Analysis.tcl test

[b.m.tanygin] Fix of the Langevin per particle test

[b.m.tanygin] Fix of the rotational anisotropy

[b.m.tanygin] Modified tests according to the correct Euler equations

[b.m.tanygin] Fixed the rotation & tests

[b.m.tanygin] Fix the rotation logic

[b.m.tanygin] Omega setting fix

[b.m.tanygin] Possible workaround of the Travis issue with 10-15 min test

[b.m.tanygin] Possible workaround of the Travis issue with 10-15 min test

[b.m.tanygin] Revert back

[b.m.tanygin] Test parameters and particle data tcl support fix

[b.m.tanygin] Build fix

[b.m.tanygin] Per-particle and per-axis rotation fixes

[b.m.tanygin] dx fix

[b.m.tanygin] SEMI_INTEGRATED gamma->0 Debugging & Fixes

[b.m.tanygin] mpi omega fix

[b.m.tanygin] SI fixes

[b.m.tanygin] More strong condition into the test

[b.m.tanygin] SI debug-only testing

[b.m.tanygin] Tests fix

[b.m.tanygin] Test fix after the Euler equations corrections commit

[b.m.tanygin] SI Travis fix

[b.m.tanygin] Increase of the integration duration in the tests

[b.m.tanygin] Time_step tuning

[b.m.tanygin] Tests fix

[b.m.tanygin] Rotation possible fix

[b.m.tanygin] Travis fix

[b.m.tanygin] Tests fix

[b.m.tanygin] Test fix

[b.m.tanygin] Euler equations nonlinear term for the anisotropic case

[b.m.tanygin] Test fix

[b.m.tanygin] I[t] removal for the ROTATIONAL_INERTIA feature

[b.m.tanygin] Rotational friction diagonal anisotropy

[b.m.tanygin] Rotational gamma global var broadcast fix

[b.m.tanygin] Rotational gamma docs

[b.m.tanygin] Rotational gamma python interface & tests

[b.m.tanygin] Python complete build fix

[b.m.tanygin] Python setter fix

[b.m.tanygin] Python fix

[b.m.tanygin] Python fix

------------------------------------------
Started by GitHub push by fweik
Building remotely on cip08 in workspace 
<http://espressomd.org/jenkins/job/master-fetch-bootstrap/ws/>
Cloning the remote Git repository
Cloning repository git://github.com/espressomd/espresso.git
 > /usr/bin/git init 
 > <http://espressomd.org/jenkins/job/master-fetch-bootstrap/ws/> # timeout=10
Fetching upstream changes from git://github.com/espressomd/espresso.git
 > /usr/bin/git --version # timeout=10
 > /usr/bin/git -c core.askpass=true fetch --tags --progress 
 > git://github.com/espressomd/espresso.git +refs/heads/*:refs/remotes/origin/*
 > /usr/bin/git config remote.origin.url 
 > git://github.com/espressomd/espresso.git # timeout=10
 > /usr/bin/git config --add remote.origin.fetch 
 > +refs/heads/*:refs/remotes/origin/* # timeout=10
 > /usr/bin/git config remote.origin.url 
 > git://github.com/espressomd/espresso.git # timeout=10
Fetching upstream changes from git://github.com/espressomd/espresso.git
 > /usr/bin/git -c core.askpass=true fetch --tags --progress 
 > git://github.com/espressomd/espresso.git 
 > +refs/heads/master:refs/remotes/origin/master
 > /usr/bin/git rev-parse origin/master^{commit} # timeout=10
Checking out Revision 50a5537306e4ce275567becdf2233b6227a257ee (origin/master)
 > /usr/bin/git config core.sparsecheckout # timeout=10
 > /usr/bin/git checkout -f 50a5537306e4ce275567becdf2233b6227a257ee # 
 > timeout=10
 > /usr/bin/git branch -a -v --no-abbrev # timeout=10
 > /usr/bin/git checkout -b master 50a5537306e4ce275567becdf2233b6227a257ee
 > /usr/bin/git rev-list 89eae7b61b6a353a0b3b4df6edd010ee839acad1 # timeout=10
Cleaning workspace
 > /usr/bin/git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > /usr/bin/git reset --hard # timeout=10
 > /usr/bin/git clean -fdx # timeout=10
[master-fetch-bootstrap] $ /bin/bash -xe /tmp/hudson2787326440518748552.sh
+ maintainer/jenkins/bootstrap.sh
19328 (process ID) old priority 0, new priority 5
  srcdir=<http://espressomd.org/jenkins/job/master-fetch-bootstrap/ws/>
  builddir=<http://espressomd.org/jenkins/job/master-fetch-bootstrap/ws/>
  insource=true
START BOOTSTRAP
<http://espressomd.org/jenkins/job/master-fetch-bootstrap/ws/> 
<http://espressomd.org/jenkins/job/master-fetch-bootstrap/ws/>
autoreconf: Entering directory `.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --warnings=all -I config
autoreconf: configure.ac: tracing
autoreconf: configure.ac: not using Libtool
autoreconf: running: /usr/bin/autoconf --warnings=all
autoreconf: running: /usr/bin/autoheader --warnings=all
autoreconf: running: automake --add-missing --copy --no-force --warnings=all
src/core/Makefile.am:28: error: Libtool library used but 'LIBTOOL' is undefined
src/core/Makefile.am:28:   The usual way to define 'LIBTOOL' is to add 'LT_INIT'
src/core/Makefile.am:28:   to 'configure.ac' and run 'aclocal' and 'autoconf' 
again.
src/core/Makefile.am:28:   If 'LT_INIT' is in 'configure.ac', make sure
src/core/Makefile.am:28:   its definition is in aclocal's search path.
parallel-tests: installing 'config/test-driver'
src/tcl/Makefile.am:25: error: Libtool library used but 'LIBTOOL' is undefined
src/tcl/Makefile.am:25:   The usual way to define 'LIBTOOL' is to add 'LT_INIT'
src/tcl/Makefile.am:25:   to 'configure.ac' and run 'aclocal' and 'autoconf' 
again.
src/tcl/Makefile.am:25:   If 'LT_INIT' is in 'configure.ac', make sure
src/tcl/Makefile.am:25:   its definition is in aclocal's search path.
autoreconf: automake failed with exit status: 1
autoreconf: Entering directory `.'
autoreconf: configure.ac: not using Gettext
autoreconf: running: aclocal --force --warnings=all -I config
autoreconf: configure.ac: tracing
autoreconf: configure.ac: not using Libtool
autoreconf: running: /usr/bin/autoconf --force --warnings=all
autoreconf: running: /usr/bin/autoheader --force --warnings=all
autoreconf: running: automake --force-missing --warnings=all
src/core/Makefile.am:28: error: Libtool library used but 'LIBTOOL' is undefined
src/core/Makefile.am:28:   The usual way to define 'LIBTOOL' is to add 'LT_INIT'
src/core/Makefile.am:28:   to 'configure.ac' and run 'aclocal' and 'autoconf' 
again.
src/core/Makefile.am:28:   If 'LT_INIT' is in 'configure.ac', make sure
src/core/Makefile.am:28:   its definition is in aclocal's search path.
src/tcl/Makefile.am:25: error: Libtool library used but 'LIBTOOL' is undefined
src/tcl/Makefile.am:25:   The usual way to define 'LIBTOOL' is to add 'LT_INIT'
src/tcl/Makefile.am:25:   to 'configure.ac' and run 'aclocal' and 'autoconf' 
again.
src/tcl/Makefile.am:25:   If 'LT_INIT' is in 'configure.ac', make sure
src/tcl/Makefile.am:25:   its definition is in aclocal's search path.
autoreconf: automake failed with exit status: 1
Build step 'Execute shell' marked build as failure
[WARNINGS] Skipping publisher since build result is FAILURE
Archiving workspace
Deleting old workspace snapshot from #752.
Archiving artifacts