I have a problem in my simulations. I have lj interaction among two
types of my particles but also I should have to force them interact
just by the nearest particle in the cut off radius.
For example I have a type A base that in its neighborhood there are lots
of type T bases. The type A base have to interact by the nearest type T
base and not to interact by the others. How can I do it by the Espresso
?!
This is my problem. In fact the interactions among AT base pairs must be H_bond, I use lj interactions instead of H_bond but there is a little problem that i wrote about it . Some the other friends guide me to change the source code to implement this special feature.