Making all in config
make[1]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/config'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/config'
Making all in src
make[1]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/src'
  GEN      myconfig-final.hpp <= ../myconfig.hpp
  GEN    config-features.hpp
make  all-recursive
make[2]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/src'
Making all in .
make[3]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/src'
  CXX    config-features.lo
  CXX    cells.lo
  CXX    collision.lo
  CXX    communication.lo
In file included from ../../src/communication.cpp:67:
../../src/EspressoSystemInterface.hpp: In constructor 'EspressoSystemInterface::EspressoSystemInterface()':
../../src/EspressoSystemInterface.hpp:107: warning: 'EspressoSystemInterface::m_q_gpu_end' will be initialized after
../../src/EspressoSystemInterface.hpp:98: warning:   'bool EspressoSystemInterface::m_gpu'
../../src/EspressoSystemInterface.hpp:10: warning:   when initialized here
  CXX    comfixed.lo
  CXX    comforce.lo
  CXX    constraint.lo
  CXX    cuda_interface.lo
  CXX    debug.lo
  CXX    domain_decomposition.lo
  CXX    energy.lo
  CXX    errorhandling.lo
  CXX    fft.lo
  CXX    fft-common.lo
  CXX    fft-dipolar.lo
  CXX    forcecap.lo
  CXX    forces.lo
In file included from ../../src/forces.cpp:58:
../../src/EspressoSystemInterface.hpp: In constructor 'EspressoSystemInterface::EspressoSystemInterface()':
../../src/EspressoSystemInterface.hpp:107: warning: 'EspressoSystemInterface::m_q_gpu_end' will be initialized after
../../src/EspressoSystemInterface.hpp:98: warning:   'bool EspressoSystemInterface::m_gpu'
../../src/EspressoSystemInterface.hpp:10: warning:   when initialized here
  CXX    galilei.lo
  CXX    ghosts.lo
  CXX    global.lo
  CXX    grid.lo
  CXX    halo.lo
  CXX    iccp3m.lo
  CXX    imd.lo
  CXX    initialize.lo
  CXX    integrate.lo
  CXX    interaction_data.lo
  CXX    lattice.lo
  CXX    layered.lo
  CXX    lb.lo
  CXX    lb-boundaries.lo
  CXX    lbgpu.lo
  CXX    metadynamics.lo
  CXX    modes.lo
  CXX    molforces.lo
  CXX    mol_cut.lo
  CXX    nemd.lo
  CXX    nsquare.lo
  CXX    particle_data.lo
  CXX    polymer.lo
../../src/grid.hpp: In function 'int constraint_collision(double*, double*)':
../../src/grid.hpp:204: warning: 'img' is used uninitialized in this function
../../src/polymer.cpp:136: note: 'img' was declared here
  CXX    pressure.lo
  CXX    random.lo
  CXX    rattle.lo
  CXX    reaction.lo
  CXX    rotation.lo
  CXX    specfunc.lo
  CXX    statistics.lo
  CXX    statistics_chain.lo
  CXX    statistics_cluster.lo
  CXX    statistics_correlation.lo
  CXX    statistics_fluid.lo
  CXX    statistics_molecule.lo
  CXX    statistics_observable.lo
  CXX    statistics_wallstuff.lo
  CXX    thermostat.lo
  CXX    topology.lo
  CXX    tuning.lo
  CXX    uwerr.lo
  CXX    verlet.lo
  CXX    virtual_sites.lo
  CXX    virtual_sites_com.lo
  CXX    virtual_sites_relative.lo
  CXX    vmdsock.lo
  CXX    ghmc.lo
  CXX    EspressoSystemInterface.lo
In file included from ../../src/EspressoSystemInterface.cpp:1:
../../src/EspressoSystemInterface.hpp: In constructor 'EspressoSystemInterface::EspressoSystemInterface()':
../../src/EspressoSystemInterface.hpp:107: warning: 'EspressoSystemInterface::m_q_gpu_end' will be initialized after
../../src/EspressoSystemInterface.hpp:98: warning:   'bool EspressoSystemInterface::m_gpu'
../../src/EspressoSystemInterface.hpp:10: warning:   when initialized here
  CXX    bmhtf-nacl.lo
  CXX    buckingham.lo
  CXX    dpd.lo
  CXX    gaussian.lo
  CXX    gb.lo
  CXX    hat.lo
  CXX    hertzian.lo
  CXX    lj.lo
  CXX    ljangle.lo
  CXX    ljcos.lo
  CXX    ljcos2.lo
  CXX    ljgen.lo
  CXX    morse.lo
  CXX    soft_sphere.lo
  CXX    steppot.lo
  CXX    tab.lo
  CXX    tunable_slip.lo
  CXX    angle.lo
  CXX    angle_harmonic.lo
  CXX    angle_cosine.lo
  CXX    angle_cossquare.lo
  CXX    angledist.lo
  CXX    dihedral.lo
  CXX    endangledist.lo
  CXX    fene.lo
  CXX    harmonic.lo
  CXX    overlap.lo
  CXX    subt_lj.lo
  CXX    object-in-fluid/area_force_local.lo
  CXX    object-in-fluid/area_force_global.lo
  CXX    object-in-fluid/bending_force.lo
  CXX    object-in-fluid/stretching_force.lo
  CXX    object-in-fluid/stretchlin_force.lo
  CXX    object-in-fluid/volume_force.lo
  CXX    debye_hueckel.lo
  CXX    elc.lo
  CXX    magnetic_non_p3m_methods.lo
  CXX    mdlc_correction.lo
  CXX    maggs.lo
  CXX    mmm1d.lo
  CXX    mmm2d.lo
  CXX    mmm-common.lo
  CXX    p3m.lo
  CXX    p3m-common.lo
  CXX    p3m-dipolar.lo
  CXX    reaction_field.lo
depbase=`echo cuda_init_cuda.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/opt/cudatoolkit-5.5/bin/nvcc --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -I. -I../../src   -DHAVE_CONFIG_H -M -o $depbase.Plo ../../src/cuda_init_cuda.cu; \
	/bin/sh ../libtool --silent --tag=CUDA   \
		--mode=compile /opt/cudatoolkit-5.5/bin/nvcc -DHAVE_CONFIG_H \
		-I. -I../../src    \
		 --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -c -o cuda_init_cuda.lo ../../src/cuda_init_cuda.cu
depbase=`echo cuda_common_cuda.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/opt/cudatoolkit-5.5/bin/nvcc --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -I. -I../../src   -DHAVE_CONFIG_H -M -o $depbase.Plo ../../src/cuda_common_cuda.cu; \
	/bin/sh ../libtool --silent --tag=CUDA   \
		--mode=compile /opt/cudatoolkit-5.5/bin/nvcc -DHAVE_CONFIG_H \
		-I. -I../../src    \
		 --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -c -o cuda_common_cuda.lo ../../src/cuda_common_cuda.cu
../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

depbase=`echo electrokinetics_cuda.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/opt/cudatoolkit-5.5/bin/nvcc --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -I. -I../../src   -DHAVE_CONFIG_H -M -o $depbase.Plo ../../src/electrokinetics_cuda.cu; \
	/bin/sh ../libtool --silent --tag=CUDA   \
		--mode=compile /opt/cudatoolkit-5.5/bin/nvcc -DHAVE_CONFIG_H \
		-I. -I../../src    \
		 --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -c -o electrokinetics_cuda.lo ../../src/electrokinetics_cuda.cu
../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

depbase=`echo lbgpu_cuda.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/opt/cudatoolkit-5.5/bin/nvcc --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -I. -I../../src   -DHAVE_CONFIG_H -M -o $depbase.Plo ../../src/lbgpu_cuda.cu; \
	/bin/sh ../libtool --silent --tag=CUDA   \
		--mode=compile /opt/cudatoolkit-5.5/bin/nvcc -DHAVE_CONFIG_H \
		-I. -I../../src    \
		 --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -c -o lbgpu_cuda.lo ../../src/lbgpu_cuda.cu
../../src/lbgpu_cuda.cu:123:2: warning: #warning Using slower atomicAdd emulation
../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/lbgpu_cuda.cu:123:2: warning: #warning Using slower atomicAdd emulation
../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

depbase=`echo p3m_gpu_cuda.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/opt/cudatoolkit-5.5/bin/nvcc --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -I. -I../../src   -DHAVE_CONFIG_H -M -o $depbase.Plo ../../src/p3m_gpu_cuda.cu; \
	/bin/sh ../libtool --silent --tag=CUDA   \
		--mode=compile /opt/cudatoolkit-5.5/bin/nvcc -DHAVE_CONFIG_H \
		-I. -I../../src    \
		 --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -c -o p3m_gpu_cuda.lo ../../src/p3m_gpu_cuda.cu
../../src/p3m_gpu_cuda.cu:209:2: warning: #warning Using slower atomicAdd emulation
../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/p3m_gpu_cuda.cu(116): warning: function "calculate_influence_function" was declared but never referenced

../../src/p3m_gpu_cuda.cu:209:2: warning: #warning Using slower atomicAdd emulation
../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/p3m_gpu_cuda.cu(116): warning: function "calculate_influence_function" was declared but never referenced

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/p3m_gpu_cuda.cu(116): warning: function "calculate_influence_function" was declared but never referenced

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/p3m_gpu_cuda.cu(116): warning: function "calculate_influence_function" was declared but never referenced

depbase=`echo EspressoSystemInterface_cuda.lo | sed 's|[^/]*$|.deps/&|;s|\.lo$||'`;\
	/opt/cudatoolkit-5.5/bin/nvcc --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -I. -I../../src   -DHAVE_CONFIG_H -M -o $depbase.Plo ../../src/EspressoSystemInterface_cuda.cu; \
	/bin/sh ../libtool --silent --tag=CUDA   \
		--mode=compile /opt/cudatoolkit-5.5/bin/nvcc -DHAVE_CONFIG_H \
		-I. -I../../src    \
		 --ptxas-options=-v -gencode arch=compute_11,code=compute_11 -gencode arch=compute_20,code=compute_20 -c -o EspressoSystemInterface_cuda.lo ../../src/EspressoSystemInterface_cuda.cu
../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

../../src/SystemInterface.hpp(41): warning: type qualifier on return type is meaningless

  GEN    config-version.cpp
  CXX    config-version.lo
  CXXLD  libEspresso.la
make[3]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/src'
Making all in tcl
make[3]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/src/tcl'
  CXX    bin_tcl.lo
  CXX    binary_file_tcl.lo
  CXX    blockfile_tcl.lo
  CXX    cells_tcl.lo
  CXX    channels_tcl.lo
  CXX    collision_tcl.lo
  CXX    comfixed_tcl.lo
  CXX    comforce_tcl.lo
  CXX    config_tcl.lo
  CXX    constraint_tcl.lo
  CXX    domain_decomposition_tcl.lo
  CXX    electrokinetics_tcl.lo
  CXX    energy_tcl.lo
  CXX    galilei_tcl.lo
  CXX    global_tcl.lo
  CXX    grid_tcl.lo
  CXX    iccp3m_tcl.lo
  CXX    imd_tcl.lo
  CXX    initialize_interpreter.lo
  CXX    integrate_tcl.lo
  CXX    interaction_data_tcl.lo
  CXX    lb-boundaries_tcl.lo
  CXX    lb_tcl.lo
  CXX    metadynamics_tcl.lo
  CXX    nemd_tcl.lo
  CXX    mol_cut_tcl.lo
  CXX    parser.lo
  CXX    particle_data_tcl.lo
  CXX    polymer_tcl.lo
  CXX    pressure_tcl.lo
  CXX    random_tcl.lo
  CXX    reaction_tcl.lo
  CXX    rattle_tcl.lo
  CXX    statistics_chain_tcl.lo
  CXX    statistics_cluster_tcl.lo
  CXX    statistics_correlation_tcl.lo
  CXX    statistics_fluid_tcl.lo
  CXX    statistics_observable_tcl.lo
  CXX    statistics_wallstuff_tcl.lo
  CXX    statistics_tcl.lo
  CXX    thermostat_tcl.lo
  CXX    topology_tcl.lo
  CXX    tuning_tcl.lo
  CXX    uwerr_tcl.lo
  CXX    virtual_sites_com_tcl.lo
  CXX    ghmc_tcl.lo
  CXX    bmhtf-nacl_tcl.lo
  CXX    buckingham_tcl.lo
  CXX    dpd_tcl.lo
  CXX    forcecap_tcl.lo
  CXX    gaussian_tcl.lo
  CXX    gb_tcl.lo
  CXX    hat_tcl.lo
  CXX    hertzian_tcl.lo
  CXX    lj_tcl.lo
  CXX    ljangle_tcl.lo
  CXX    ljcos2_tcl.lo
  CXX    ljcos_tcl.lo
  CXX    ljgen_tcl.lo
  CXX    morse_tcl.lo
  CXX    soft_sphere_tcl.lo
  CXX    steppot_tcl.lo
  CXX    tab_tcl.lo
  CXX    tunable_slip_tcl.lo
  CXX    angle_tcl.lo
  CXX    angle_harmonic_tcl.lo
  CXX    angle_cosine_tcl.lo
  CXX    angle_cossquare_tcl.lo
  CXX    angledist_tcl.lo
  CXX    dihedral_tcl.lo
  CXX    endangledist_tcl.lo
  CXX    fene_tcl.lo
  CXX    harmonic_tcl.lo
  CXX    overlap_tcl.lo
  CXX    subt_lj_tcl.lo
  CXX    object-in-fluid/area_force_local_tcl.lo
  CXX    object-in-fluid/area_force_global_tcl.lo
  CXX    object-in-fluid/bending_force_tcl.lo
  CXX    object-in-fluid/stretching_force_tcl.lo
  CXX    object-in-fluid/stretchlin_force_tcl.lo
  CXX    object-in-fluid/volume_force_tcl.lo
  CXX    debye_hueckel_tcl.lo
  CXX    elc_tcl.lo
  CXX    magnetic_non_p3m_methods_tcl.lo
  CXX    maggs_tcl.lo
  CXX    mmm1d_tcl.lo
  CXX    mmm2d_tcl.lo
  CXX    p3m-dipolar_tcl.lo
  CXX    p3m_tcl.lo
  CXX    reaction_field_tcl.lo
  CXX    mdlc_correction_tcl.lo
  CXX    cuda_init_tcl.lo
  CXXLD  libEspressoTcl.la
  CXX    Espresso_install-scriptsdir.o
  CXX    Espresso_install-main.o
  CXXLD  Espresso.install
  CXX    Espresso-scriptsdir.o
  CXX    Espresso-main.o
  CXXLD  Espresso
make[3]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/src/tcl'
make[2]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/src'
make[1]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/src'
Making all in .
make[1]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build'
cd ..; sh config/genversion.sh -rd > /g/g14/ustach2/espresso/test/espresso/build/version.txt
test -L Espresso || ln -s src/tcl/Espresso .
make[1]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build'
Making all in scripts
make[1]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/scripts'
for file in init.tcl ABHmath.tcl auxiliary.tcl blockfile_support.tcl bundle.tcl countBonds.tcl dielectrics.tcl gibbs_ghmc.tcl object_in_fluid.tcl parallel_tempering.tcl pdb.tcl polymer.tcl statistics.tcl vtf.tcl vtk.tcl; do \
	  if test ! -e $file || test ! $file -ef /g/g14/ustach2/espresso/test/espresso/build/../scripts/$file; then \
	    /usr/bin/install -c -m 644 /g/g14/ustach2/espresso/test/espresso/build/../scripts/$file /g/g14/ustach2/espresso/test/espresso/build/scripts; \
	  fi; \
	done
make[1]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/scripts'
Making all in tools
make[1]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/tools'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/tools'
Making all in testsuite
make[1]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/testsuite'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/testsuite'
Making all in doc
make[1]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/doc'
Making all in logo
make[2]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/doc/logo'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/doc/logo'
Making all in doxygen
make[2]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/doc/doxygen'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/doc/doxygen'
Making all in dg
make[2]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/doc/dg'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/doc/dg'
Making all in ug
make[2]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/doc/ug'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/doc/ug'
Making all in tutorials
make[2]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/doc/tutorials'
Making all in 01-lennard_jones
make[3]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/doc/tutorials/01-lennard_jones'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/doc/tutorials/01-lennard_jones'
Making all in 02-charged_system
make[3]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/doc/tutorials/02-charged_system'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/doc/tutorials/02-charged_system'
make[3]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/doc/tutorials'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/doc/tutorials'
make[2]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/doc/tutorials'
make[2]: Entering directory `/g/g14/ustach2/espresso/test/espresso/build/doc'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/doc'
make[1]: Leaving directory `/g/g14/ustach2/espresso/test/espresso/build/doc'